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Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from the command line.

License: GNU General Public License v3.0

Python 98.43% Makefile 1.57%
sarscov2 sars-cov-2 gisaid-format gisaid-upload gisaid-xls ncbi-ftp genbank tsv ena meta-data

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yemilawal pvanheus

multisub's Issues

Please tag a release

Hi there

I'd like to package this in bioconda (as a first step towards writing a Galaxy wrapper). Can you please tag a release with a version number (preferably a semantic versioned one) to make it easier to package?

Thanks!

GISAID upload token

Hi Max,

Regarding the upload token for GISAID. In the manual for the CLI uploader there is a test token.

Cheers,

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