Topic: protein-sequences Goto Github
Some thing interesting about protein-sequences
Some thing interesting about protein-sequences
protein-sequences,Implementation of Protein Classification based on subcellular localization using ProtBert(Rostlab/prot_bert_bfd_localization) model from Hugging Face library, based on BERT model trained on large corpus of protein sequences.
Organization: aws-samples
protein-sequences,Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
Organization: bioinf-mcb
Home Page: https://metagenomic-deepfri.readthedocs.io/
protein-sequences,:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.
Organization: biojava
Home Page: https://biojava.org
protein-sequences,Code for CELL-E: Biological Zero-Shot Text-to-Image Synthesis for Protein Localization Prediction
Organization: bohuanglab
Home Page: https://www.biorxiv.org/content/10.1101/2022.05.27.493774v1
protein-sequences,Transformer Based Language Model for Peptide Property Prediction
User: chakradharg
protein-sequences,Recurrent Geometric Network in Pytorch
User: conradry
protein-sequences,Visually explore covariation in protein families
Organization: debbiemarkslab
protein-sequences,Inference of couplings in proteins and RNAs from sequence variation
Organization: debbiemarkslab
protein-sequences,An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.
User: dohlee
protein-sequences,An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.
User: dosorio
protein-sequences,Paratope Prediction using Deep Learning
User: eliberis
protein-sequences,An experimental deep learning & genotype network-based system for predicting new influenza protein sequences.
User: ericmjl
Home Page: https://fluforecaster.herokuapp.com/
protein-sequences,Neural Networks for Protein Sequence Alignment
Organization: flatironinstitute
protein-sequences,programs and scripts, mainly python, for analyses related to nucleic or protein sequences
User: fomightez
protein-sequences,Official repository for discrete Walk-Jump Sampling (dWJS)
Organization: genentech
Home Page: https://arxiv.org/abs/2306.12360
protein-sequences,A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
User: guyleonard
protein-sequences,A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
Organization: j-snackkb
protein-sequences,Awesome Protein Representation Learning
User: lirongwu
protein-sequences, An HP 2D Lattice Environment with a Gym-like API for the Protein Folding Problem
User: ljvmiranda921
protein-sequences,Implementation of ProteinBERT in Pytorch
User: lucidrains
protein-sequences,Generation of protein sequences and evolutionary alignments via discrete diffusion models
Organization: microsoft
protein-sequences,Spectral Framework For AI Model Evaluation
Organization: mims-harvard
Home Page: https://zitniklab.hms.harvard.edu/projects/SPECTRA/
protein-sequences,PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.
Organization: mpi-dortmund
protein-sequences,🧬 Toolkit for generating various numerical features of protein sequences
User: nanxstats
Home Page: https://nanx.me/protr/
protein-sequences,💊 Molecular informatics toolkit with integration of bioinformatics and cheminformatics tools for drug discovery
User: nanxstats
Home Page: https://nanx.me/Rcpi/
protein-sequences,Protein 3D structure prediction pipeline
Organization: nf-core
Home Page: https://nf-co.re/proteinfold
protein-sequences,Genomic and Proteomic data exploration and pattern mining
Organization: opencog
protein-sequences,Inference code for PoET: A generative model of protein families as sequences-of-sequences
Organization: openproteinai
protein-sequences, AbLang: A language model for antibodies
Organization: oxpig
protein-sequences,A collection of simple JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. The Sequence Manipulation Suite is commonly used by molecular biologists, for teaching purposes, and for program and algorithm testing.
User: paulstothard
Home Page: https://paulstothard.github.io/sequence_manipulation_suite/
protein-sequences,The official code for "TaxDiff: Taxonomic-Guided Diffusion Model for Protein Sequence Generation"
Organization: pku-yuangroup
protein-sequences,Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation
Organization: prescient-design
Home Page: https://prescient-design.github.io/lobster/
protein-sequences,Official repository for discrete Walk-Jump Sampling (dWJS)
Organization: prescient-design
Home Page: https://prescient-design.github.io/walk-jump/
protein-sequences,Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies
Organization: psipred
protein-sequences,PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.
Organization: pymodproject
Home Page: http://schubert.bio.uniroma1.it/pymod/index.html
protein-sequences,Protein structure alignment and search algorithm
User: rcedgar
protein-sequences,Open-source usearch
User: rcedgar
Home Page: https://drive5.com/usearch
protein-sequences,A high performance tool to identify orthologs and paralogs across genomes.
User: rinoahu
protein-sequences,A case study on Pfam dataset to classify protein families.
User: ronakvijay
protein-sequences,Get protein embeddings from protein sequences
User: sacdallago
Home Page: http://docs.bioembeddings.com
protein-sequences,A fully automated gene annotator from RNA-Seq expression data
User: sagnikbanerjee15
protein-sequences,Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
Organization: sbl-sdsc
protein-sequences,LAMBDA – the Local Aligner for Massive Biological DatA
Organization: seqan
Home Page: https://github.com/seqan/lambda
protein-sequences,Progressive Transfer Learning for Peptide-Protein-Specific Interaction Profiling based on Interpretable Biological Sequence Pragmatic Analysis
User: shutaochen97
protein-sequences,Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.
Organization: songlab-cal
Home Page: https://www.biorxiv.org/content/10.1101/676825v1
protein-sequences,Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology. (DEPRECATED)
Organization: songlab-cal
Home Page: https://arxiv.org/abs/1906.08230
protein-sequences,Multi-task and masked language model-based protein sequence embedding models.
User: tbepler
protein-sequences,Protein orthologous group assignment with deep learning
Organization: univiecube
protein-sequences,Revolutionizing DNA analysis and making it accessible to all through innovative AI-powered analysis and interpretive tools.
User: verisimilitudex
protein-sequences,A Python API for the RCSB Protein Data Bank (PDB)
User: williamgilpin
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