Topic: protein-data-bank Goto Github
Some thing interesting about protein-data-bank
Some thing interesting about protein-data-bank
protein-data-bank,Protein Graph Library
User: a-r-j
Home Page: https://graphein.ai/
protein-data-bank,Versatile computational pipeline for processing protein structure data for deep learning applications.
Organization: adaptyvbio
Home Page: https://adaptyvbio.github.io/ProteinFlow/
protein-data-bank,CA-2-HCOMB is a tool for simplifying single-chain protein structures from PDB files into manageable models like various honeycombs, retaining essential information for in-depth computations. It's efficient for large datasets and machine learning, and user-friendly for research and education.
User: ahabegger
protein-data-bank,Lattice2Backbone is a software tool that converts lattice representations of protein structures into detailed, carbon alpha-only backbone structures, bridging the gap between simplified models and comprehensive biological analysis in structural biology and bioinformatics.
User: ahabegger
protein-data-bank,Utility to parse PDB(Protein Data Bank) file format 3.3 into JSON format
User: allbegray
protein-data-bank,local PDB manager
User: amarinhosn
protein-data-bank,PDB parser in Haskell
Organization: biohaskell
protein-data-bank,:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.
Organization: biojava
Home Page: https://biojava.org
protein-data-bank,Toolbox for molecular animations in Blender, powered by Geometry Nodes.
User: bradyajohnston
Home Page: https://bradyajohnston.github.io/MolecularNodes/
protein-data-bank,:wave: Webserver & command-line tool for search of APO (unbound) protein structures from HOLO (bound) forms and vice versa. http://apoholo.cz
Organization: cusbg
Home Page: http://apoholo.cz
protein-data-bank,Tiny Scala API to stream, parse, and cache atom coordinates from Protein Data Bank files
User: dmyersturnbull
protein-data-bank,Parse the CIF file format for Protein Data Bank (PDB) data.
User: eliotjones
protein-data-bank,A simple C library to extract the amino acid sequence from a file in PDB (Protein data bank) format and output to a FASTA format file.
User: exterex
protein-data-bank,Deep functional residue identification
Organization: flatironinstitute
protein-data-bank,Analysis of Protein-Flavin Interactions that Control Chemical Reactivity
Organization: flavoinformatics
protein-data-bank,Ribbon diagrams of proteins in #golang.
User: fogleman
protein-data-bank,Object-oriented processing of PDB files in Python
User: georgewatson
Home Page: https://georgewatson.me/blog/science/2019/06/04/object-oriented-processing-of-pdb-files-in-python/
protein-data-bank,A console application for the estimation of the primary and secondary structure's elements. Input should be the FASTA-formatted "ss.txt" file generated by PDB database.
User: gkoulouras
Home Page: http://apps.grigoriskoulouras.com/software/seqsecanalyzer_ver_1.0.zip
protein-data-bank,Program to plot a Ramachandran plot of all dihedral angles from a given PDB file. Background is empirically generated from the peptides in the Top8000 PDB data set.
User: joseph-ellaway
protein-data-bank,defines the interface region of a protein complex making possible to calculate the i_rmsd between native and predicted structures following the CAPRI criteria
User: matheuspokkkk
protein-data-bank,BPL is an Python app to solve Loop Closure Problems.
User: michaelsouza
protein-data-bank,Visualize and interact with Protein Data Bank (pdb) and structural files in R and Shiny
User: nvelden
Home Page: https://nvelden.github.io/NGLVieweR/
protein-data-bank,Protein Data Bank (pdb) file parser
User: orhanbalci
protein-data-bank,A Python Framework for Integrating Classical and Quantum Mechanical Simulation Data, Experimental Data, and Cheminformatics into a Unified Predictive Engine for Macromolecular Design
User: peterpaohuang
protein-data-bank,Superpose3D is a software for local comparison of protein structures that allows for user-defined structure representations
User: pfgherardini
protein-data-bank,Clickable PDB statistics: synchrotrons and MX software
Organization: project-gemmi
Home Page: https://project-gemmi.github.io/pdb-stats/
protein-data-bank,Open Source, Mostly just clicking mouse to finish a simulation with Ambertools and OpenMM. It was designed to use locally but another notebook to finish the simulaiton on Colab was attached as well.
User: quantaosun
protein-data-bank,A collection of useful tutorials for Protein Science
User: rasbt
protein-data-bank,The specification of the MMTF format for biological structures
Organization: rcsb
Home Page: http://mmtf.rcsb.org/
protein-data-bank,Web-based front- and backend for PDB2Movie scripts
User: rudoroemer
protein-data-bank,A script that computationally designs a vaccine
User: sarisabban
protein-data-bank,BioJava examples in Jupyter Notebooks
Organization: sbl-sdsc
protein-data-bank,Methods for mapping genomic data onto 3D protein structure.
Organization: sbl-sdsc
protein-data-bank,Methods for mapping proteomics data on 3D protein structure.
Organization: sbl-sdsc
protein-data-bank,Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
Organization: sbl-sdsc
protein-data-bank,Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
Organization: sbl-sdsc
protein-data-bank,Structural Bioinformatics Training Workshop & Hackathon 2018
Organization: sbl-sdsc
protein-data-bank,Visualization of proteins directly from the PDB database or from a .pdb file.
User: spenhouet
protein-data-bank,Some miscellaneous scripts I made to do protein analysis using the pytraj library
User: svletana
protein-data-bank,A Python API for the RCSB Protein Data Bank (PDB)
User: williamgilpin
protein-data-bank,Basic analysis of ligands extracted from structures described in Protein Data Bank
User: writ3it
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