Topic: bacterial-genomes Goto Github
Some thing interesting about bacterial-genomes
Some thing interesting about bacterial-genomes
bacterial-genomes,Wonderful O-antigens Operons Finder
Organization: aglabx
bacterial-genomes,Various scripts for efficient processing of 10k Salmonella genomes
User: apredeus
bacterial-genomes,A flexible pipeline for complete analysis of bacterial genomes
Organization: bactopia
Home Page: https://bactopia.github.io
bacterial-genomes,Machine-learning-based general bacterial promoter prediction tool.
User: bioinformaticslabatmun
bacterial-genomes,Alignment-free bacterial identification and classification in metagenomics sequencing data using machine learning
Organization: bioinfouqam
bacterial-genomes,cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.
Organization: bu-isciii
bacterial-genomes,Digital evolution model dedicated to bacterial in silico experimental evolution.
User: charlesrocabert
bacterial-genomes,Bacterial relatedness server, supporting sequence clustering & mixture detection
User: davidhwyllie
bacterial-genomes,Genomic neighbor typing of bacterial pathogens using MinHash :rat:
User: esteinig
bacterial-genomes,PowerBacGWAS: Power calculations for Bacterial GWAS
User: francesccoll
Home Page: https://github.com/francesccoll/powerbacgwas
bacterial-genomes,analyzing bacterial genome based ontologies and phylogenomics informativeness
User: gauravcodepro
bacterial-genomes,Bioinformatics tool to find integrons in bacterial genomes
Organization: gem-pasteur
bacterial-genomes,SNP calling pipeline using mccortex
User: hcdenbakker
bacterial-genomes,PhyloTrace is a GUI platform for a fully controllable cgMLST analysis workflow.
User: infinity-a11y
Home Page: https://www.PhyloTrace.com
bacterial-genomes,This repository contains the code used for screening putative extracellular Contractile Injection System (eCIS) loci from genomic sequences.
User: ipb-jianyang
bacterial-genomes,DELEAT is a bioinformatic analysis pipeline for the design of large-scale genome deletions in bacterial genomes.
User: jime-sg
bacterial-genomes,Fast k-mer based tool for multi locus sequence typing (MLST)
Organization: jordanlab
bacterial-genomes,Functions for working with NCBI's Pathogen Detection data
User: jtrachsel
Home Page: https://jtrachsel.github.io/pdtools/
bacterial-genomes,A snakemake workflow for downstream processing of WGS
User: lexleong
bacterial-genomes,High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers
User: liaoherui
Home Page: https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-023-01615-w
bacterial-genomes,A companion application for analyzing and viewing BTyper output files in aggregate
User: lmc297
bacterial-genomes,Rapid, in silico characterization of Bacillus cereus group isolates using WGS data
User: lmc297
bacterial-genomes,In silico multi-locus sequence typing (MLST) for bacterial genomes
User: lmc297
bacterial-genomes,SNP and variant calling pipeline for bacteria
User: lmc297
bacterial-genomes,Python package to create line drawings of genomic comparison 'webs'/'hive plots'
User: mb1511
bacterial-genomes,My PhD thesis
User: mbhall88
Home Page: https://doi.org/10.17863/CAM.81350
bacterial-genomes, Combining de novo and reference-guided assembly with Scaffold_builder
User: metageni
bacterial-genomes,Tool intended to pull out sequences and annotations between insertion sites specified by the user.
User: milnus
bacterial-genomes,Identification of putative duplicated genes among bacterial genomes
Organization: molevol-ub
bacterial-genomes,Simple bacterial assembly and annotation pipeline
Organization: nf-core
Home Page: https://nf-co.re/bacass
bacterial-genomes,genome sized sequences clustering
Organization: niu-lab
bacterial-genomes,Computer vision in the service of bacteriology refers to the use of computer algorithms and technology to analyze and interpret images of bacteria for the purpose of identifying and characterizing different types of bacteria.
User: notthestallion
bacterial-genomes,Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
User: oschwengers
bacterial-genomes,CGView is a Java package for generating high-quality, zoomable maps of circular genomes.
User: paulstothard
Home Page: https://paulstothard.github.io/cgview/
bacterial-genomes,The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.
User: paulstothard
Home Page: https://paulstothard.github.io/cgview_comparison_tool/
bacterial-genomes,Phage-Host Interaction Search Tool
Organization: refresh-bio
bacterial-genomes,Workflow designed for Download, QC, Assemble, Variant calling, and Annotate bacterial WGS in batch
User: rx32940
bacterial-genomes,Flexible workflow designed for bacterial WGS analyses (annotation, core/pan-genome reconstruction, phylogeny)
User: rx32940
bacterial-genomes,Split Kmer Analysis
User: simonrharris
bacterial-genomes,R package to perform data pre-processing for more informative bacterial GWAS
Organization: snitkin-lab-umich
bacterial-genomes,📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria
User: telatin
bacterial-genomes,Analyzes the GC skew of bacterial chromosomes using multiple calculations. Outputs a data frame of GC skew values and wiggle files for visualization.
User: the1stmartian
bacterial-genomes,Snakemake workflow for processing Mycobacterium leprae whole genome sequencing data
User: thyagoleal
bacterial-genomes,Insert genes into genomes to aid synthetic test data generation
User: tseemann
bacterial-genomes,🍣 🦐 A lightweight nucleotide bacterial ortholog clustering tool
User: tseemann
bacterial-genomes,:zap: :aquarius: Rapid prokaryotic genome annotation
User: tseemann
bacterial-genomes,An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences
User: wanyuac
bacterial-genomes,A computational tools for improving the functional annotation of bacterial genomes and the classification of CDSs into cllusters of orthologous groups (COGs). It allows summarizing annotations from different resources to provide a more accurate annotation of genes regarding their assignment into COGs and their categories.
User: xpolak37
bacterial-genomes,shovill批量执行脚本 Batch Shovill can help you execute shovill batch assemblies.
User: xx19941215
bacterial-genomes,Bioinformatics pipeline for nanopore sequencing data
User: zhaoc1
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