Topic: contigs Goto Github
Some thing interesting about contigs
Some thing interesting about contigs
contigs,Genome assembly evaluation tool
Organization: ablab
Home Page: http://quast.sf.net
contigs,Genome assembly - From theory to practice (and back)
Organization: algbio
contigs,Compare and shuffle heterozygosity using BED and VCF files
User: antoineho
contigs,Take information about snps on short sequence reads and accurately place the snps in a reference genome
User: cnuge
contigs,An efficient index for the colored, compacted, de Bruijn graph
Organization: combine-lab
contigs,Sequencing of unculturable plant pathogens
User: cpolano
contigs,BSc Senior Project, Bioinformatics Django web platform for storage and analysis of Biological data. Still in use by the group CHROMEVOL from FIU
User: daniruizperez
contigs,Learning!
User: erg55
contigs,Pipeline to prepare alignments for visualization with ACT (goo.gl/1T28jX) and for locating possible inter-chromosomal re-arrengments/misjoints
User: fg6
contigs,A package for fast genomic sequences manipulation or interrogation
User: fg6
contigs,Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
Organization: gabaldonlab
contigs,Software to identify known plasmid sequence from metagenomic assembly using Minhash
User: haradama
contigs,Software to identify plasmid sequence data from metagenome using logistic regression and Minhash
User: haradama
contigs,Run SSPACE in loop
User: jnarayan81
contigs,Explore palindromes
User: jnarayan81
contigs,This pipeline is intended to be a convenient way to work though large sets of metagenomic or metatranscriptiomic datasets while also retaining high analytical flexibility due to retained intermediate results that might be useful outside of the intended purpose.
User: leondlugosch
contigs,An ensemble of plasmid classification tools
User: lisavader
contigs,A comprehensive workflow for de novo assembly of whole-genome shotgun sequencing data using Velvet, followed by BLAST searches to analyze assembled contigs.
User: mansikath
contigs,Toolkit for binning FASTA, FASTQ and FAST5 files according to taxonomic annotation
User: masikol
contigs,De novo genome assembly and multisample variant calling
Organization: mcveanlab
Home Page: https://github.com/mcveanlab/mccortex/wiki
contigs,Simulate metagenomic short reads from one or more populations.
Organization: merenlab
contigs,✨🧬 Refined binning of metagenomic contigs using assembly graphs
Organization: metagentools
Home Page: https://graphbin.readthedocs.io/en/stable/
contigs,☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs
Organization: metagentools
Home Page: https://graphbin2.readthedocs.io/en/stable/
contigs,🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs
Organization: metagentools
Home Page: https://metacoag.readthedocs.io/en/stable/
contigs,Scalable long read self-correction and assembly polishing with multiple sequence alignment
User: morispi
Home Page: https://doi.org/10.1038/s41598-020-80757-5
contigs,DEPRECATED: Discover divergent virus sequences, prune flanking cellular sequences, make basic report
User: mtisza1
contigs,Refining Domain Boundaries and Performing Large Scale Parsing
Organization: ncbi-codeathons
contigs,(Meta-)genome screening for functional and natural product gene sequences
Organization: nf-core
Home Page: https://nf-co.re/funcscan
contigs,Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
User: oschwengers
Home Page: https://doi.org/10.1099/mgen.0.000398
contigs,get chloroplast and mitochondrial genes from contigs of genome-skimming or transcriptome data
User: quxiaojian
contigs,Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files
User: raymondkiu
contigs,
User: schultzm
contigs,Software for prediction of plasmid sequences in metagenomic assemblies
User: smaegol
contigs,Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
User: tanghaibao
contigs,Split a multifasta file into many fasta files containing a single sequence, or extract a list of sequences/contigs. Supports compressed input and output files.
User: tmaklin
contigs,Wally: Visualization of aligned sequencing reads and contigs
User: tobiasrausch
contigs,:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes
User: tseemann
contigs,Visualize read-to-contig alignment during assembly analysis
User: zyxue
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