Topic: epigenetics Goto Github
Some thing interesting about epigenetics
Some thing interesting about epigenetics
epigenetics,This program analyzes methylation levels at six CpG sites in the genome of blood cells to produce a prediction of an individual's biological age, using different machine learning and deep learning models.
User: akshajd
epigenetics,Calculate DNA methylation age using Horvath 2013 method
Organization: aldringsvitenskap
epigenetics,Modelling DNA methylation profiles
User: andreaskapou
epigenetics,A preprocessing and QC pipeline for HiChIP data
Organization: aryeelab
epigenetics,BioWardrobe: an integrated platform for analysis of epigenomics and transcriptomics data
Organization: barski-lab
Home Page: https://demo.biowardrobe.com/
epigenetics, Deep learning infrastructure for genomics
Organization: bimsbbioinfo
epigenetics,Detecting methylation using signal-level features from Nanopore sequencing reads
User: bioinfomaticscsu
epigenetics,R/Bioconductor package for optimized functional annotation of ChIP-seq data
User: bohdan-khomtchouk
epigenetics,Bead-based single-cell atac processing
User: caleblareau
Home Page: http://caleblareau.github.io/bap
epigenetics,Cell type specific enrichments using finemapped variants and quantitative epigenetic data
User: caleblareau
Home Page: https://caleblareau.github.io/gchromVAR/
epigenetics,mgatk: mitochondrial genome analysis toolkit
User: caleblareau
Home Page: http://caleblareau.github.io/mgatk
epigenetics,Preprocessing pipeline for (sc)ATAC data
User: caleblareau
Home Page: https://buenrostrolab.com/proatac
epigenetics,Deep neural networks for predicting CpG methylation
User: cangermueller
epigenetics,
User: chenlab-sj
epigenetics,A library for full-stack aging clocks design and benchmarking.
Organization: computationalaginglab
epigenetics,CWL based Bioinformatics Workflows
Organization: datirium
epigenetics,Simple web browser to visualize HiC tracks
Organization: deeptools
epigenetics,Suite of command-line software for high-performance graphical analysis of ChIP-seq/RNA-seq/ATAC-seq data
User: eblancoga
epigenetics,Bacterial Epigenomics Analysis SuiTe
Organization: fanglab
epigenetics,A Snakemake-based pipeline for gene mapping in Triticeae.
User: fei0810
epigenetics,Python-based preprocessing software for Illumina methylation arrays
Organization: foxotech
epigenetics,Differential Epigenetic Correlation Test
User: gabrielhoffman
Home Page: https://gabrielhoffman.github.io/decorate
epigenetics,EpiMethEx (Epigenetic Methylation and Expression), a R package to perform a large-scale integrated analysis by cyclic correlation analyses between methylation and gene expression data.
User: giupardeb
epigenetics,Bioinformatic tools (R scripts) for the analysis of Absolute Quantification of Architecture (AQuA-HiChIP) style data.
User: gryderart
epigenetics,An R package designed to integrate and visualize various levels of epigenomic information, including but not limited to: ChIP, Histone, ATAC, and RNA sequencing. epiRomics is also designed to identify enhancer and enhanceosome regions from these data.
Organization: huising-lab
epigenetics,Quantify the Concurrence of DNA Methylation and De-methylation
User: jiejunshi
epigenetics,Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants
Organization: jlab-code
epigenetics,Signal-level algorithms for MinION data
User: jts
epigenetics,[ACM-BCB 2023 Oral Presentation] Official repository of "Deep learning-based survival prediction using DNA methylation-derived 3D genomic information"
User: jwyang21
Home Page: https://dl.acm.org/doi/10.1145/3584371.3612966
epigenetics,Online version of tool is live
User: kandarprj
Home Page: https://epidecoder.shinyapps.io/shinyapp/
epigenetics,Toolkit for concretely describing non-canonical DNA, RNA, and proteins
Organization: karrlab
Home Page: https://www.bpforms.org
epigenetics,R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing
User: kdkorthauer
epigenetics,Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellular contexts"
Organization: kundajelab
epigenetics,Python package to analyze DNA methylation data
User: liguowang
epigenetics,Single-cell Transcriptome and Regulome Analysis Pipeline
User: liulab-dfci
epigenetics,Scan input genomic regions with known DNA motifs
User: louiskwok-picb
epigenetics,A Python API library for exploration and data retrieval from NCBI
User: mutejester
epigenetics, Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.
Organization: nanoporetech
epigenetics,Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.
Organization: nanoporetech
epigenetics,Comparison, benchmarking & QC of epigenetic datasets
Organization: neurogenomics
Home Page: https://doi.org/doi:10.18129/B9.bioc.EpiCompare
epigenetics,A collection of softwares to handle and model PacBio kinetic signal data and predict epigenetics modifications.
Organization: ngs-ai-org
epigenetics,Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
Organization: pinellolab
epigenetics,Analysis Pipeline for Single Cell ATAC-seq
User: r3fang
epigenetics,Pipeline for BS-Seq data based on snakemake
User: seb-mueller
epigenetics,An efficient, documented, reproducible Snakemake methylation analysis pipeline for BS-seq and EM-seq samples, including cfDNA.
User: semenko
epigenetics,A SnakeMake workflow to analyse whole genome bisulfite sequencing data from allopolyploids.
User: supermaxiste
epigenetics,Human and mouse genome assemblies customized for rDNA mapping
User: vikramparalkar
epigenetics,Long sequencing reads classifier
User: yaoli3
epigenetics,:dart: ChIP peak Annotation, Comparison and Visualization
Organization: yulab-smu
Home Page: https://onlinelibrary.wiley.com/share/author/GYJGUBYCTRMYJFN2JFZZ?target=10.1002/cpz1.585
epigenetics,WGBS/NOMe-seq Data Processing & Differential Methylation Analysis
User: yupenghe
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