Topic: transcription-factor-binding Goto Github
Some thing interesting about transcription-factor-binding
Some thing interesting about transcription-factor-binding
transcription-factor-binding,Database of HTH-DNA complexes
Organization: aqlaboratory
transcription-factor-binding,pyJASPAR: A Pythonic interface to JASPAR transcription factor motifs
User: asntech
Home Page: https://pyjaspar.rtfd.io
transcription-factor-binding,Code for the BMC Genomics paper (Integrating binding and expression data to predict transcription factors combined function)
Organization: bcmslab
Home Page: https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-020-06977-1
transcription-factor-binding,Dual threshold optimization for identifying convergent evidence: TF binding locations and TF perturbation responses.
Organization: brentlab
transcription-factor-binding,Simple Python parser for MotEvo.
User: brlauuu
Home Page: https://github.com/brlauuu/motevowrapper
transcription-factor-binding,Artificial neural network to predict transcription factor binding.
User: christacaggiano
transcription-factor-binding,ChIP-seq analysis notes from Ming Tang
User: crazyhottommy
transcription-factor-binding,Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.
Organization: danko-lab
transcription-factor-binding,Repozitorijoje saugomi failai, implementuojantys R Shiny aplikaciją ir leidžiantys vertinti įkeltų genominių duomenų kokybę bei vykdyti biologines analizes.
User: dansta0804
transcription-factor-binding,Which ESR1 and PGR binding sites are functional?
User: dogmaticcentral
transcription-factor-binding,Implementation of BPNet, a base-resolution convolutional neural network for transcription-factor binding prediction, in PyTorch.
User: dohlee
transcription-factor-binding,Prediction of the binding specificity of transcription factors using support vector regression
Organization: draeger-lab
transcription-factor-binding,Gibbs 3.2 formerly located at http://ccmbweb.ccv.brown.edu/gibbs/gibbs.html
User: gibbs-hmm
transcription-factor-binding,An R package designed to integrate and visualize various levels of epigenomic information, including but not limited to: ChIP, Histone, ATAC, and RNA sequencing. epiRomics is also designed to identify enhancer and enhanceosome regions from these data.
Organization: huising-lab
transcription-factor-binding,Python bindings for the TFM-Pvalue program.
User: j-andrews7
transcription-factor-binding,Threshold and p-value computations for Position Weight Matrices
User: kchu25
transcription-factor-binding,tfNet is a computational tool that identifies putative regulatory regions and genomic signal interactions in a genome-wide scale.
User: komorowskilab
transcription-factor-binding,Find putative transcription factor binding domains
User: lincoln-harris
transcription-factor-binding,A repository with exploration into using transformers to predict DNA ↔ transcription factor binding
User: lucidrains
transcription-factor-binding,[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
Organization: magics-lab
transcription-factor-binding,DNA Transcription Factor Binding Prediction (Self-learning Project)
User: mahossam
transcription-factor-binding,Motif discovery for DNA sequences using multiobjective optimization and genetic programming.
User: mbelmadani
Home Page: https://mbelmadani.github.io/motifgp/
transcription-factor-binding,Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
Organization: miraldilab
transcription-factor-binding,An R package for de novo discovery of enriched DNA motifs (e.g. TFBS)
Organization: myersgroup
transcription-factor-binding,Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
Organization: pinellolab
transcription-factor-binding,GIMSAN: motif-finder with biologically realistic and reliable statistical significance analysis
User: pnpnpn
transcription-factor-binding,ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnrich provide functions to import any in-house catalogue, automate and plot the enrichment analysis for genomic regions.
Organization: remap-cisreg
Home Page: http://remap-cisreg.github.io/ReMapEnrich
transcription-factor-binding,:m: Tool for motif conservation analysis
User: saketkc
Home Page: http://saket-choudhary.me/moca
transcription-factor-binding,Prediction of transcription factor binding based on DNA sequence
User: sciencemoo
transcription-factor-binding,
User: tanlabcode
transcription-factor-binding,A simple genetic algorithm for finding consensus binding sties in DNA sequences in Drosophila
User: tbrunetti
transcription-factor-binding,Pipeline for integration different models of transcription factor binding sites
User: ubercomrade
transcription-factor-binding,A robust statistical test for TF footprint data analyses
Organization: ucarlab
transcription-factor-binding,Scripts for motif assessment for HOCOMOCO v10/v11.
User: vorontsovie
Home Page: http://hocomoco.autosome.ru/
transcription-factor-binding,Predicting transcription factor-DNA binding from sequence
User: ytabatabaee
transcription-factor-binding,Transcription Factor (TF) binding preference prediction using deep neural networks.
User: zanarashidi
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