Topic: population-genomics Goto Github
Some thing interesting about population-genomics
Some thing interesting about population-genomics
population-genomics,Bayesian bi-clustering of categorical data
User: albertopessia
population-genomics,Population Assignment using Genetic, Non-genetic or Integrated Data in a Machine-learning Framework. Methods in Ecology and Evolution. 2018;9:439–446.
User: alexkychen
Home Page: http://alexkychen.github.io/assignPOP/
population-genomics,PyPop: Python for Population Genomics
User: alexlancaster
Home Page: http://pypop.org
population-genomics,Small GATK alignment and variant calling pipeline using python
User: antoineho
population-genomics,An python omics data toolkit for the analysis across biological scales
Organization: biomedsciai
population-genomics,Code and data from the Bredeson, Lyons, et al. Dioscorea alata var. TDa95/00328 v2 genome and analysis manuscript.
User: bredeson
population-genomics,Python script to generate .snp and .ind Eigenstrat files from a PHYLIP infile
User: btmartin721
population-genomics,群体遗传学分析中用到的script和skill等
User: crazzy-rabbit
population-genomics,Guides I wrote for labmates
User: epsalazarf
population-genomics,strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.
User: ericarcher
population-genomics,Small program to mask positions that are likely to result in PMD artifact from a BAM file using a predefined SNP catalog
User: etkayapar
population-genomics,A tool to visualize the haplotype pattern and various information in excel.
User: fengcong3
population-genomics,Estimation of pairwise distances under a probabilistic framework
User: fgvieira
population-genomics,Estimation of per-individual inbreeding coefficients under a probabilistic framework
User: fgvieira
population-genomics,Estimation of per-individual inbreeding tracts under a probabilistic framework
User: fgvieira
population-genomics,Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework
User: fgvieira
population-genomics,rhierbaps: R implementation of hierBAPS
User: gtonkinhill
population-genomics,Dockerfile for REHH version 2.0.4
User: hernanmd
population-genomics,Scripts supporting the manuscript submitted to the Molecular Ecology Resources Special Issue 'Omics for species conservation'
User: janawold1
population-genomics,Presented here are the tools and strategies implemented for short-read SV discovery (Chapter 3), a population genomics study (Chapter 4) and genome graph construction (Chapter 5).
User: janawold1
population-genomics,Multisample Variant Format ToolKit
User: jbpease
population-genomics,Scripts in R for analyses of Isolation by Distance (IBD) - PART 2 in LANDSCAPE GENOMICS PIPELINE
User: jdalapicolla
population-genomics,Scripts in R for Landscape Genomics Analyses v.2
User: jdalapicolla
population-genomics,the hierfstat package
User: jgx65
population-genomics,Population-wide Deletion Calling
Organization: kehrlab
population-genomics,PopGenHelpR is an R package that estimates commonly used population genomic statistics and generates publication quality figures.
User: kfarleigh
population-genomics,PRAWNS: A fast and scalable bioinformatics tool that generates an efficient pan-genome representation of closely related whole genomes to provide a concise list of genomic features
User: kiranjavkar
population-genomics,Tools to work with variant call format files
User: knausb
population-genomics,Recombination Landscape Estimation using Recurrent Neural Networks
Organization: kr-colab
population-genomics,Genome-wide scan for balancing selection using beta statistic
User: ksiewert
population-genomics,Various unix and perl scripts to deal with genetics data: prepare submission files, extract results, and so. Check their "help" to see usage
User: m-osky
population-genomics,Estimation of population genetic parameters using deep learning
User: mfumagalli
population-genomics,Population Genomics in Practice main website
Organization: nbisweden
Home Page: https://nbisweden.github.io/workshop-pgip/
population-genomics,An Efficient Swiss Army Knife for Population Genomic Analyses in R
User: pievos101
population-genomics,A python library to develop genomic data simulators
User: remytuyeras
Home Page: http://www.normalesup.org/~tuyeras/node_diss/blg/haplodx.html
population-genomics,Code used to analyse WGS data of giraffe in Coimbra et al. 2021
User: rtfcoimbra
Home Page: https://doi.org/10.1016/j.cub.2021.04.033
population-genomics,starmie: plotting and inference for population structure models :star2:
User: sa-lee
population-genomics,Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
User: sanjaynagi
Home Page: https://sanjaynagi.github.io/rna-seq-pop/
population-genomics,Estimates polymorphism and divergence parameters from FASTA alignments
User: santiagosnchez
population-genomics,Python package for detecting positive selective sweeps using time-series genomics sampling data.
Organization: schriderlab
Home Page: https://pypi.org/project/Timesweeper/
population-genomics,Method to estimate the age and intensity of recent bottlenecks/founder events, using genotype data and a recombination map.
User: sunyatin
population-genomics,R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecular data. Those will be introduced during the course.
User: v-z
Home Page: https://trapa.cz/en/course-molecular-data-r-2022
population-genomics,For QMUL's Genome Bioinformatics MSc module BIO721P & SIB's Spring school in bioinfo & population genomics
Organization: wurmlab
Home Page: https://wurmlab.com/genomicscourse/
population-genomics,Automated and distributed population genetic model inference from allele frequency spectra
User: xin-huang
Home Page: https://dadi-cli.readthedocs.io/en/latest/
population-genomics,A collection for available tools in population genetics
User: xin-huang
population-genomics,Detecting Archaic Introgression from Population Genetic Data with S*
User: xin-huang
Home Page: https://sstar.readthedocs.io/en/latest/
population-genomics,Small scripts for population genetics analysis
User: zhuochenbioinfo
population-genomics,The fastest VCF/BCF parser in R https://doi.org/10.1093/bioinformatics/btae049
User: zilong-li
Home Page: https://zilong-li.github.io/vcfppR/
population-genomics,Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using ANGSD and related softwares. Flexible to datasets that combine high/low coverage and historical/fresh samples.
User: zjnolen
Home Page: https://zjnolen.github.io/PopGLen/
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