Topic: eqtl Goto Github
Some thing interesting about eqtl
Some thing interesting about eqtl
eqtl,Scripts of Final Master Project
User: antoniogomez
eqtl,LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
User: boxiangliu
eqtl,Computationally efficient and statistically powerful software for detecting context-specific eQTL effects in multi-context genomic studies.
User: brunildaballiu
eqtl,analysis for UCSF BMI 206 based on Hormozdiari et al (2016) Am J Hum Genet
User: christacaggiano
eqtl,Hierarchical probabilistic models for multiple gene/variant associations based on NGS data
User: dvav
eqtl,Analysis of host regulatory networks that could be impacted upon infection with the Covid-19 virus
Organization: genome3d
eqtl,Association analysis of ADH and ALDH gene regulatory interactions with GWAS traits.
Organization: genome3d
eqtl,Analysis of tissue-specific regulatory impacts of alcohol dependence-associated SNPs.
Organization: genome3d
eqtl,Analysis of regulatory impacts of autism-associated SNPs on biological pathways in the fetal and adult cortex.
Organization: genome3d
eqtl,De novo discovery of traits co-occurring with chronic obstructive pulmonary disease.
Organization: genome3d
eqtl,Pipeline to investigate multimorbidity of complex traits/phenotypes by integrating chromatin interaction and expression quantitative trait loci data.
Organization: genome3d
eqtl,Analysis of regulatory impacts of GWAS SNPs associated with psychiatric disorders and cognitive functioning.
Organization: genome3d
eqtl,Experimental design framework for scRNAseq population studies (eQTL and DE)
Organization: heiniglab
eqtl,NPDR: Nearest-neighbor Projected-Distance Regression with the generalized linear model
Organization: insilico
Home Page: https://insilico.github.io/npdr/
eqtl,Hidden Markov Random Field Model - Inferring Gene-Disease Association by an Integrative Analysis of eQTL GWAS and Protein-Protein Interaction data
User: junwangmath
eqtl,Code and raw data used in the analyses for: Trans-acting genetic variation affects the expression of adjacent genes via horizontal mechanisms.
User: krivand
eqtl,CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq
Organization: limix
eqtl,Software to perform multi-ancestry SNP fine-mapping on molecular data
Organization: mancusolab
Home Page: https://mancusolab.github.io/sushie
eqtl,Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform GWAS/TWAS on complex trait.
Organization: mancusolab
eqtl,
User: matmu
Home Page: http://genehopper.de/qtlizer
eqtl,Older repo for MRLocus. See new website for software usage guide:
User: mikelove
Home Page: https://thelovelab.github.io/mrlocus
eqtl,Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)
User: naim-panjwani
Home Page: https://locusfocus.research.sickkids.ca
eqtl,An Online Database of 3D Chromatin Structure
Organization: ncbi-hackathons
eqtl,Projects realized during Computational Genomics course.
User: pruswielki
eqtl,A snakemake pipeline for QTL mapping. Based on the GTEX pipeline
Organization: rajlabmssm
eqtl,An R interface to the GTEx Portal API
User: rmgpanw
Home Page: https://rmgpanw.github.io/gtexr/
eqtl,A lightweight Julia package for eQTL genome scans near real-time.
Organization: senresearch
eqtl,Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression
Organization: single-cell-genetics
eqtl,Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation
Organization: single-cell-genetics
eqtl,Tejaas - a tool for discovering trans-eQTLs
Organization: soedinglab
Home Page: https://github.com/soedinglab/tejaas/wiki
eqtl,GTEx eQTL analysis
Organization: stephenslab
Home Page: http://stephenslab.github.io/gtex-eqtls
eqtl,fastQTL analysis of methylation and expression data
User: swvanderlaan
Home Page: https://swvanderlaan.github.io/fastQTLToolKit/
eqtl,A workflow based on QTLtools to run cis- and trans-QTL analyses.
User: swvanderlaan
Home Page: https://swvanderlaan.github.io/QTLToolKit/
eqtl,R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"
User: szcf-weiya
Home Page: https://hohoweiya.xyz/MTWAS/
eqtl,Some workflows I wrote for my phd projects
User: xukeren
Home Page: https://xukeren.github.io/phd-pipeline/
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