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Robin's 'Spatial Proteomics Data Dissemination' project
In this issue we list all functionalities and ideas regarding the "Datasets" page on which all uploaded MSnSets can be found. Suggestions or screenshots of comparable websites and other ideas are welcome.
A list of features that we might consider
@Kohze - you are up for a lab seminar on Monday 5 June. It would be good to have a mock of the whole website up and running, and a prototype of the data view page.
What we need to get out is as much constructive feedback as possible. To make that happen (as opposed to random opinions), we should ideally have a list of questions that we would like people to answer. I'll start the list below, please do amend as you see fit.
While uploading all data to firebase (with the plot2D data in it) I got the following error:
Error in plot2D(eval(as.name(dName)), plot = FALSE) :
No rows left after removing NAs!
I then ran a lapply
through the dataset and identified "havugimana2012" as the problematic MSnSet.
While we could add exeption handlers for that case, its rather problematic to add extra code for a single exeption, so I will exclude that dataset for now.
It's good to have the design issues, but they would probably be better in the repo that actually contains the page. Could you transfer the SpatialMapDev
repo to the SpatialMap
organisation and move these discussion there, please.
The extraction with getMarkerClasses takes 6+ seconds while generating only a short string, which might be soon a problem when we want to calculate the meta data on the slower shiny server for the uploading process.
I will look at the pRoloc method if we can get any performance improvement.
To set reasonable parameters for the t-SNE visualisation in the online app, we need to assess the hyper-paramters on all (or many) dataset. An example of how to do this is shown in the vignette. In a nutshell, one needs to iterate over a range of steps
and perplexity
values and produce the grid of PCA plots.
@Kohze - could you create an Rmd
file with this analysis in sci-reports/rsne.Rmd
and update this issue once it is ready. Thanks!
In this issue we list all functionalities and ideas regarding the "DataView" page, which displays among others the D3.js plot. Suggestions or screenshots of comparable websites and other ideas are welcome.
Plot Related:
Table Related
API related:
Other:
A page to collect the UI frameworks we can use and share screenshots of interesting references.
since the new fluent design is still close to the fabric components, we could re-create the new "fluent" design with all their features. Fluent design seems to be a mix of the apple minimalistic design and material design, which seems quite convincing.
Other react.js alternatives:
More inspirations:
A declarative, efficient, and flexible JavaScript library for building user interfaces.
๐ Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. ๐๐๐
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google โค๏ธ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.