lieberinstitute / drfetools_manuscript

manuscript for dRFEtools

dRFEtools manuscript

This repository contains the code for the dRFEtools manuscript that describes the dRFEtools software - dynamic Recursive Feature Elimination.

License

Attribution-NonCommercial: CC BY-NC

This license lets others remix, tweak, and build upon our work non-commercially as long as they acknowledge our work.

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Citation

If you the dRFEtools software or anything in this repository please cite the following pre-print:

Benjamin, KJM, Katipalli, T, and Paquola, ACM. dRFEtools: Dynamic recursive feature elimination for omics.

Pre-print DOI: https://doi.org/10.1101/2022.07.27.501227.

Files

directory	contents
optimization	jupyter notebook showing dRFEtools optimization
sklearn_simulation	simulation data using sklearn
bio_simulation	simulation data using biological software
brainseq_p1	BrainSeq Phase 1 case studies using dRFEtools

Public Files

Supplementary Figures and Tables.

Supplementary Data: hosted on zenodo

Table S1: dRFEtools_mdd_classification_GO_analysis.xlsx