Comments (1)
Added new feature with a new PathoStat class that extends the phyloseq class. Added a simplified entry function runPathoStat that takes the pathostat object as the input. The pathostat object extends phyloseq and has all the information loaded now, including the full sample data information.
from pathostat.
Related Issues (16)
- BatchQC dependency HOT 1
- Implement temporal analysis and visualization tab HOT 1
- Coerce input data into phyloseq-class objects
- Distinguish between discrete and continuous variables HOT 1
- Create color scheme that can be used across modules
- Modularize code HOT 4
- Check that cached taxonomy matches with loaded reports HOT 1
- Load phyloseq object into shiny server (temporary) HOT 2
- Implement core microbiome 2D plot
- Implement core microbiome heatmap
- Remove dependency on "microbiome" HOT 5
- OTU filtering HOT 5
- Improve formatting of taxonomy table
- Taxonomy table data structure HOT 1
- Shini not working HOT 1
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from pathostat.