Comments (10)
Great idea, I'll do that for biocam and neuropixel.
- How about MEA1k and Neuroseeker?
- Is it correct that the Neuroseeker reader is actually for a converted/filtered file?
- Do we have an URL for the Visapy data?
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Made a notebook for Neuropixel with data download, please check:
https://github.com/mhhennig/HS2/blob/master/notebooks/localised_spikes_clustered-neuropixel.ipynb
from hs2.
I cleared the notebook output and changed the download method: the problem is that the request
package is not built in, would need to be pip-installed...
from hs2.
Great, thanks. However:
file_name = "data/neuropixelRaw.bin"
Does this work if data
does not exist?
from hs2.
Indeed it doesn't. At the next update I'll change that.
from hs2.
ViSAPy notebook ready too, plz test...hell, urllib is a pain!
from hs2.
...and a biocam notebook ready for testing too.
from hs2.
Notebooks complete now. I wonder whether we should leave the images in them as it's also a nice demo, and github renders them well..?
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Sorry, I didn't read them and I removed them (it messes up when merging). We can give them another run later when everything is done.
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Is this done?
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Related Issues (20)
- Data lost at end of files HOT 1
- Save the version info in output files HOT 1
- `probe.py` path does not exist error when `RecordingExtractor` is called from SpikeToolkit
- Detection state is saving the wrong cutout_length
- Version in __version__ HOT 7
- clustering using DBSCAN HOT 1
- bug with HS 0.3.7 HOT 2
- Run `HS2` without probe file HOT 2
- version 0.3.99 fails at importing probe utils HOT 1
- Building wheel for herdingspikes (setup.py) ... error error: subprocess-exited-with-error HOT 3
- Version 0.3.100 fails at import HOT 3
- bug with the 0.3.7 version HOT 2
- Localization difference between BioCam and RecordingExtractor objects HOT 4
- create_probe_files leading to write OSError HOT 3
- Cant run herdingspikes HOT 3
- Trouble running HS on Spikeinterface HOT 5
- HS on Spike Interface HOT 1
- Kernel died when using herdingspikes in SpikeInterface HOT 2
- Build fails on Windows 10 HOT 3
- HerdingSpike through SpikeInterface wrongly scales waveform. HOT 1
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