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Review example notebooks about hs2 HOT 10 CLOSED

mhhennig avatar mhhennig commented on August 17, 2024
Review example notebooks

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Comments (10)

mhhennig avatar mhhennig commented on August 17, 2024

Great idea, I'll do that for biocam and neuropixel.

  • How about MEA1k and Neuroseeker?
  • Is it correct that the Neuroseeker reader is actually for a converted/filtered file?
  • Do we have an URL for the Visapy data?

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mhhennig avatar mhhennig commented on August 17, 2024

Made a notebook for Neuropixel with data download, please check:
https://github.com/mhhennig/HS2/blob/master/notebooks/localised_spikes_clustered-neuropixel.ipynb

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martinosorb avatar martinosorb commented on August 17, 2024

I cleared the notebook output and changed the download method: the problem is that the request package is not built in, would need to be pip-installed...

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mhhennig avatar mhhennig commented on August 17, 2024

Great, thanks. However:
file_name = "data/neuropixelRaw.bin"
Does this work if data does not exist?

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martinosorb avatar martinosorb commented on August 17, 2024

Indeed it doesn't. At the next update I'll change that.

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mhhennig avatar mhhennig commented on August 17, 2024

ViSAPy notebook ready too, plz test...hell, urllib is a pain!

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mhhennig avatar mhhennig commented on August 17, 2024

...and a biocam notebook ready for testing too.

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mhhennig avatar mhhennig commented on August 17, 2024

Notebooks complete now. I wonder whether we should leave the images in them as it's also a nice demo, and github renders them well..?

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martinosorb avatar martinosorb commented on August 17, 2024

Sorry, I didn't read them and I removed them (it messes up when merging). We can give them another run later when everything is done.

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martinosorb avatar martinosorb commented on August 17, 2024

Is this done?

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Related Issues (20)

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