Comments (2)
@sierra-moxon is there a way to get this generated and up on the website as a markdown file or something similar? Is gen-prefix-map part of linkml or this is specific to nmdc?
from nmdc-schema.
part of linkml, we can add it to the gen-doc target and deploy the .json file that results to our documentation site (that also allows downloading of the file at a stable URL instead of a github raw URL for computational usage).
see PR #1976
but this may not be what you are asking for - this is generating prefixes at the schema level, not for each individual NMDC typecode.
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Related Issues (20)
- write a notebook report class.slot paths that take a ControlledTermValue* range
- Remodel class that aggregates steps of `WorkflowExecution` for easier schema traversal HOT 1
- `has_input`, `has_output`, and `has_process_parts` slots on `ProtocolExecution` need pattern constraints
- `berkeley-schema-fy24`: Facilitate access to `nmdc_materialized_patterns` schema via PyPI package HOT 2
- Delete Class WorkflowChain in Berkeley schema HOT 2
- `berkeley-schema-fy24`: Implement super migrator that runs all partial migrators in correct order HOT 1
- Find a home for these comments taken from `src/scripts/report_biosamples_per_study.py`
- check if classes associated with `alternative_identifiers` can use ANY `alternative_identifiers` HOT 5
- Migrations: Make it easier to test migrators against a Mongo database
- `berkeley-schema-fy24`: Update migrators to account for `WorkflowChain` class being removed
- Publish schema to PyPI via GitHub Release `v10.5.4` HOT 1
- Migrations: Implement "no op" migrator from `v10.4.0` to `v10.5.4`
- `berkeley-schema-fy24`: Some migrators use incorrect collection name (instead of `mags_set`)
- Rename branches to eliminate Berkeley commits from `main` HOT 6
- 2024-06-18 `id` pattern validation summaries and SPARQL-based referential integrity checks on MongoDB contents with and without migration HOT 6
- Facilitate access to `nmdc_materialized_patterns` schema variant via PyPI package HOT 2
- produce a nmdc-schema YAML artifact with deprecated elements included HOT 1
- Remove WorkflowExeuctionActivity as a range for Database slot activity_set
- tighter pattern constraint on was_generated_by
- Migrator: Update `migrator_from_10_3_0_to_10_4_0.py` so it also updates `was_generated_by` values HOT 1
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