nmdc-schema needs a more global mechanism for capturing ownership-like credit about nmdc-schema

[aclum]

Adding this to this sprint as we need to determine custom attributes for NCBI submission testing.

[sujaypatil96]

Comprehensive example from NCBI (Submission, BioProject, BioSample, SRA): https://www.ncbi.nlm.nih.gov/viewvc/v1/trunk/submit/public-docs/sra/samples/sra.submission.bs.bp.run.xml?view=co

[sujaypatil96]

Mechanism by which we say who owns the Submission:

<Submission>
	<Description>
		<Comment>BP(1.0)+BS(1.0)+SRA</Comment>
		<Organization role="owner" type="institute">
			<Name>Institute of Biology</Name>
			<Contact email="[email protected]">
				<Name>
					<First>jane</First>
					<Last>doe</Last>
				</Name>
			</Contact>
		</Organization>
		<Hold release_date="2015-10-21"/>
	</Description>

[turbomam]

• Where does "ownership" appear in the NCBI Submission Schema (or any of its constituents)? Look in the XSDs.
• which are required?
• which optional ones do we want to fill in?
• do we already have slots that capture all of that?

The NMDC schema has has_credit_association for Study and processing_institution for PlannedProcess.

• Submission XSD: https://www.ncbi.nlm.nih.gov/viewvc/v1/trunk/submit/public-docs/common/submission.xsd?view=co
• BioProject XSD: https://www.ncbi.nlm.nih.gov/viewvc/v1/trunk/submit/public-docs/bioproject/bioproject.xsd?view=co
• BioSample XSD: https://www.ncbi.nlm.nih.gov/viewvc/v1/trunk/submit/public-docs/biosample/biosample.xsd?view=co

[sujaypatil96]

From the Submission XSD:

<xs:element name="Organization" minOccurs="1" maxOccurs="unbounded" type="typeOrganization">
	<xs:annotation>
		<xs:documentation>
                    Organization(s) involved into the submission.
                    One organization is the owner of submission data which is identified by  attribute "role"
                  </xs:documentation>
	</xs:annotation>
</xs:element>

<xs:attribute name="role" use="optional">
	<xs:annotation>
		<xs:documentation>
          Role of the ogranization in submission - owner of the data or just a participant.
          It is expected that there is one owner of the submission data.
        </xs:documentation>
	</xs:annotation>
	<xs:simpleType>
		<xs:restriction base="xs:string">
			<xs:enumeration value="owner"/>
			<xs:enumeration value="participant"/>
		</xs:restriction>
	</xs:simpleType>
</xs:attribute>

<xs:complexType name="typeOrganization">

[turbomam]

@turbomam to contact John at NCBI and check assumptions about the Organization and Submitter nodes in the NCBI submission schema