Comments (5)
added to schema, but hasn't been assigned as the range of any slot yet
have to pick between one of the two 21T FTICR (?) values
from nmdc-schema.
see also used
from nmdc-schema.
Enum exists. need to populate permissible values for both vendor and model
Two separate enums of Insrument class
@corilo and @SamuelPurvine will work on and help with this
from nmdc-schema.
Class:Instrument
Has Model and Vendor enums
Need to capture the EXACT instrument
(Example: I have 3 FTICR-MS ... I need to know that this data is from FTICR.. but ALSO this data set is from FTICR-A and this is from FTICR-B)
Consider re-adding instrument_name or need a way to capture exact instrument that is minimally disruptive when new instruments are used / data is provided from new instruments ... but is not error prone... string means it's easy for people to say instrument A is instrument 1. but they're the same
from nmdc-schema.
This has been refactored to use the Instrument
class. See microbiomedata#38.
from nmdc-schema.
Related Issues (20)
- `berkeley-schema-fy24`: Delete obsolete code, including code obsoleted by Berkeley schema changes
- write a notebook report class.slot paths that take a ControlledTermValue* range
- Remodel class that aggregates steps of `WorkflowExecution` for easier schema traversal HOT 1
- `has_input`, `has_output`, and `has_process_parts` slots on `ProtocolExecution` need pattern constraints
- `berkeley-schema-fy24`: Facilitate access to `nmdc_materialized_patterns` schema via PyPI package HOT 2
- Delete Class WorkflowChain in Berkeley schema HOT 2
- `berkeley-schema-fy24`: Implement super migrator that runs all partial migrators in correct order HOT 1
- Find a home for these comments taken from `src/scripts/report_biosamples_per_study.py`
- check if classes associated with `alternative_identifiers` can use ANY `alternative_identifiers` HOT 5
- Migrations: Make it easier to test migrators against a Mongo database
- `berkeley-schema-fy24`: Update migrators to account for `WorkflowChain` class being removed
- Publish schema to PyPI via GitHub Release `v10.5.4` HOT 1
- Migrations: Implement "no op" migrator from `v10.4.0` to `v10.5.4`
- `berkeley-schema-fy24`: Some migrators use incorrect collection name (instead of `mags_set`)
- Rename branches to eliminate Berkeley commits from `main` HOT 6
- 2024-06-18 `id` pattern validation summaries and SPARQL-based referential integrity checks on MongoDB contents with and without migration HOT 6
- Facilitate access to `nmdc_materialized_patterns` schema variant via PyPI package HOT 1
- produce a nmdc-schema YAML artifact with deprecated elements included
- Remove WorkflowExeuctionActivity as a range for Database slot activity_set
- tighter pattern constraint on was_generated_by
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