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Simple bacterial assembly and annotation pipeline

Home Page: https://nf-co.re/bacass

License: MIT License

Dockerfile 0.85% HTML 2.55% Python 15.33% Nextflow 81.27%

bacass's Introduction

Hi, I'm Davi 🧑🏻‍🎓.

@@Biotechnologist and Bioinformatician@@
+ Living in Ananindeua, Brazil 🇧🇷.
+ Masters student at PPGBPA - UEPA/IEC
- 21 years old
! Programmer focused on Bioinformatics tools and pipelines
# Main Focus: Bash, Powershell, Linux,HPC, Nextflow, Python and Bioinformatics

About me

My name is Davi Marcon, my main interests are: Bioinformatics specially focused on bacterial resistance genes prediction, Metagenomics for interest genes discovery and everything related to bacteriology 🔬, I also a terminal ui fan.

Academic info

I'm a Biotechnologist graduated at UFPA - Federal University of Pará (Pará, Brazil). Currently working at Instituto Evandro Chagas with academic guidance of Phd. Karla Valéria Lima, more information here

Experience with:

NGS data processing, Microbial Genomic Assembly, Metagenomics using 16s rRNA, microbial antibiotic resistance and Phylogenetic inference.

Programming Languages:

Currently I'm using Python with Biopython package focusing on scripting, I'm also learning how to implement pipelines on Nextflow.

My tools for the moment:

Nextflow Python R Bash Powershell

My stats

Top Langs Mxrcon's GitHub stats

  1. 💪 Opened PR #86 in mycobactopia-org/MTBseq-nf
  2. 💪 Opened PR #85 in mycobactopia-org/MTBseq-nf
  3. ⭐ Starred appliedepi/emory_training
  4. ⭐ Starred santiagosnchez/vcf2fasta
  5. ⭐ Starred nashsu/FreeAskInternet

Last Updated: Sunday, May 5th, 2024, 12:33:39 AM

Other stuff:

On my free time i solve Katas at Codewars using Python

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bacass's People

Contributors

angelovangel avatar apeltzer avatar bewt85 avatar drpatelh avatar ewels avatar maxulysse avatar nf-core-bot avatar xlinxlin avatar

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