mxrcon / bionamegenerator

A small project to generate random repository/release/project names based on Biological names and related topics

Hi, I'm Davi 🧑🏻‍🎓.

@@Biotechnologist and Bioinformatician@@
+ Living in Ananindeua, Brazil 🇧🇷.
+ Masters student at PPGBPA - UEPA/IEC
- 21 years old
! Programmer focused on Bioinformatics tools and pipelines
# Main Focus: Bash, Powershell, Linux,HPC, Nextflow, Python and Bioinformatics

About me

My name is Davi Marcon, my main interests are: Bioinformatics specially focused on bacterial resistance genes prediction, Metagenomics for interest genes discovery and everything related to bacteriology 🔬, I also a terminal ui fan.

Academic info

I'm a Biotechnologist graduated at UFPA - Federal University of Pará (Pará, Brazil). Currently working at Instituto Evandro Chagas with academic guidance of Phd. Karla Valéria Lima, more information here

Experience with:

NGS data processing, Microbial Genomic Assembly, Metagenomics using 16s rRNA, microbial antibiotic resistance and Phylogenetic inference.

Programming Languages:

Currently I'm using Python with Biopython package focusing on scripting, I'm also learning how to implement pipelines on Nextflow.

My tools for the moment:

My stats

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1. ⭐ Starred gmmsb-lncc/emmsb-recursos
2. ⭐ Starred btholt/sqlite-app
3. ⭐ Starred NilsIrl/dockerc
4. 💪 Opened PR #87 in mycobactopia-org/MTBseq-nf
5. ⭐ Starred typst/typst

Last Updated: Saturday, August 24th, 2024, 8:08:50 AM

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Other stuff:

On my free time i solve Katas at Codewars using Python

bionamegenerator's Issues

[Suggestion] Consider the use of an embedded database

Hi @Mxrcon ,

Great initiative with the project, looking forward to using it!

I was going through the commit history and the latest changes indicate the majority of changed-lines to be because of the static lists of various resources.

I was wondering whether it might be useful - in future - to rely upon embeddable databases and instead of iterating over the arrays while invoking the Get-* functions then perhaps the overall performance would be optimised.

There are two embeddable databases which come to my mind

• https://github.com/nightroman/Ldbc - This is a Powershell package and basically built with dotNET

• SQLite - This is a binary basically, written in C however it has clients in various languages/platforms like dotNET, Python etc.

Create a psake task to generate the dictionaries

Hi @Mxrcon ,

I noticed that the https://github.com/Mxrcon/BioNameGenerator/blob/main/BioNameGenerator/Databases/Generate-Databases.ps1 is basically a small task to generate the sqlite database from the TSV files.

I was wondering whether it makes sense to

• Add a task to download these TSV files into a folder: This way the sources would be self-documenting
• Add another task to generate the database

Nothing urgent, but something nice to have as it'll guide the collaborators.

Consider adding `ubuntu code names` as Dictionaries

Ubuntu uses name and adjectives for generating release names, they always match the first letter.
I'm considering adding them as a new dictionaries:

https://wiki.ubuntu.com/DevelopmentCodeNames