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mosler-micro-mosler

mrbayes

MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

nbis-mdl-helper

Helper repo to hold container for mdl

nbis-meta

A snakemake workflow for metagenomic projects

nbis-template-support-reports

nbis-templates-quarto

NBIS-themed Quarto template

nbis-utilitycode

NBIS-UtilityCode: a place for bioinformatics tools and libraries, written and maintained by NBIS, the National Bioinformatics Infrastructure Sweden.

nginx_letsencrypt_php

Set up a nginx server with letsencrypt and php

ngpglue

Small scripts and other similar NGP solutions

ngscourse

Introduction to Bioinformatics Using NGS Data

optisel-api

R Rest API for The Herd Book

pari-affiliate-website

Sources behind https://neic.no, the official NeIC website.

pathfindr

R code for variant prioritization, intended for use with Sarek

pgip

Population Genomics in Practice main website

pgip-data

Population genomics in practice - data repository

pgip-tools

Population genomics in practice utility and exercise package

phemulator

Phemulator tool for visualising GWAS effect sizes in A_Johansson_PP

pipelines

Pipelines developed within NBIS through different pipeline frameworks.

pipelines-bpipe

NBIS bpipe pipelines framework

pipelines-nextflow

A set of workflows written in Nextflow for Genome Annotation.

plotsimmap

R script for plotting output from SIMMAP's ancestral state reconstructions

predictprotein-webserver-boctopus2

Web-server for BOCTOPUS2 - a predictor for topology of transmembrane beta-barrel proteins

predictprotein-webserver-common-backend

A generic backend framwork for sequence prediction web-servers using WSDL API

predictprotein-webserver-pconsc3

A django based web-server platform suitable for schedualling time consuming jobs only at the remote computational node

predictprotein-webserver-prodres

Web server for PRODRES: Fast protein searches using a protein domain-reduced database.

predictprotein-webserver-proq3

predictprotein-webserver-scampi2

Web server for SCAMPI2

predictprotein-webserver-subcons

Web server for SubCons: a new ensemble method for improved subcellular localization predictions

predictprotein-webserver-topcons2

web-server implementation for topcons2

project_template

An example of how to organize files for a research project to increase reproducibility