nbisweden Goto Github PK

sms_4947_20_cva24v_receptor

sms_5123_20_am_fungi_annotation

sms_6278_ng-larsson

NBIS SMS project #6278 N.-G. Larsson

sms_6701_plus1_nucleosome_position_library_from_yeast

NBIS SMS #6701

snakemake-workflow-tool

How to package up a Snakemake workflow as a command-line tool

snakemake-wrappers

This is the development home of the Snakemake wrapper repository, see

snakemake_best_practice

Small snakemake best practice workflow

st_pipeline

ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.

styles-dm-practices

Styles for The Carpentries lessons.

swefreq-browser

Browser for swefreq data

taxifier

Taxonomic Classifier

tesorter

python3 version of TEsorter: lineage-level classification of transposable elements using conserved protein domains

tess_scrapers

TeSS HTML page scrapers in Ruby looking for training resources and events metadata.

theherdbook

The Herd Book

tissue-adherent-vmb

toolsinfo

Contains YML files with content for tools section of NBIS website.

transposonpsi

TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to major clades/families of transposon Open Reading Frames.

transxpress-snakemake

transXpress: a Snakemake pipeline for rapid de novo transcriptome assembly and annotation

uirods

A proof-of-concept for a super-lightweight web interface for iRODS (http://irods.org). These days, you should probably check out GoRods (https://github.com/jjacquay712/GoRODS) instead.

urdr

Timelogging system of NBIS

vagrant-ega-data-api

Vagrant environment for ega-data-api testing

vault_raft_snapshotter

An agent which provides periodic snapshotting capabilities of Vault's Raft backend

vcf2cytosure

Convert VCF with structural variations to CytoSure format

wgs-structvar

Whole Genome Sequenceing Structural Variation Pipelines

workflow-tools-evaluation

Evaluating workflow tools and formats, such as the Common Workflow Language (CWL) for possible use within NBIS

workflows

Community maintained workflows & tools (with examples)

workshop-advanced-python

Workshop on advanced python lead by Sergio Netotea

workshop-archive

Archive of old workshops given by NBIS

workshop-bioinformatics-for-pis

NBIS course Bioinformatics for Principal Investigators

workshop-common

Common configuration of githubpages for workshops