ncbi-nlp Goto Github PK

ab3p

Abbreviation definition dection library trained on PubMed abstracts

bc6pm

Evaluation scripts for BioCreative VI Precision Medicine Track

bioc-json

Tool that converts between BioC XML files and BioC JSON files

biosentvec

BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences

biowordvec

blue_benchmark

BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.

bluebert

BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).

covid-19-ct-cxr

COVID-19-CT-CXR, a public database of COVID-19 CXR and CT images

covidtermvar

deeprel

A convolutional neural network model for relation extraction.

deepseenet

:eyes: DeepSeeNet is a deep learning framework for classifying patient-based age-related macular degeneration severity in retinal color fundus photographs.

eztag

Web interface that allows users to perform computer-assisted text annotation

medcalc-bench

Benchmarking the medical calculation capabilities of large language models.

medical-imaging-causal-fairness

ml_net

ML-Net is a novel end-to-end deep learning framework for multi-label classification of biomedical tasks. ML-Net combines the label prediction network with a label count prediction network, which can determine the output labels based on both label confidence scores and document context in an end-to-end manner.

ncbitextlib

Software library for building a large-scale data infrastructure for text mining

negbio

:newspaper: High-performance tool for negation and uncertainty detection in radiology reports

nqac

phenorerank

phenotagger

PhenoTagger

pubmed-best-match

Machine-learning based pipeline relying on LambdaMART currently used in PubMed for relevance (Best Match) searches

pubtator-covid19

pubtator-gpt

taggerone

General-purpose tagger for joint named entity recognition and normalization. Includes models for both diseases and chemicals (drugs) in biomedical publications.

teamtat

Text annotation tool for team collaboration

trialgpt

Code and data for TrialGPT.

vartriage