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Sample code for ldsc analyses in UKBB
Hi,
I guess this is a bit unusual, but I was wondering how can I use the sumstats provided on UKB Heritability (for instance, I used LDSR-formatted summary statistics data provided here) to run locally (using ldsc tool)?
I initially downloaded summary stats, and fed into ldsc with different LD scores (both partiotioned: 1000G_Phase3_baselineLD_v1.1_ldscores.tgz and for univariate analysis: eur_ref_ld_chr/eur_w_ld_chr), but my intercept (and other stats) were different to those reported online. Am I missing something here? are those summary stats outdated (I guess round 2 is the latest, no?)?
Thanks!
Oveis
Hi,
I am not familiar with google cloud and hope to run the anlaysis locally. Is there a way for me to download the files from Google Cloud? For example, I want to get sumstats files but I don't know how to find gs://ukbb-gwas-results/ldsc/
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