Comments (10)
maxulysse
commented on August 19, 2024
1
@nvnieuwk issue transfered
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matthdsm
commented on August 19, 2024
1
Actually, this IS related to #modules, so I opened another related issue there.
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matthdsm
commented on August 19, 2024
1
Fixed in nf-core/modules#2897
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edmundmiller
commented on August 19, 2024
1
This is a duplicate of #92 which I asked to move over to modules 😆
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edmundmiller
commented on August 19, 2024
1
Closing it @ushnaahmad feel free to reopen if you still have the error!
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nvnieuwk
commented on August 19, 2024
Hi, can you move this issue to nf-core/demultiplex? This seems to be a problem with the pipeline and how the module is implemented there rather than with the bcl2fastq module. Or you can post about this on Slack in the #demultiplex channel.
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nvnieuwk
commented on August 19, 2024
Thanks! I didn't know this was possible 🥳
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matthdsm
commented on August 19, 2024
@ushnaahmad, we would happily accept a pull request with an updated Dockerfile!
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matthdsm
commented on August 19, 2024
@ushnaahmad, we pushed a new image to docker hub. Can you pull that one and confirm it's working for you now?
docker pull nfcore/bcl2fastq:2.20.0.422
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matthdsm
commented on August 19, 2024
Whatever it is, it should be fixed now!
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Related Issues (20)
- Wrong REGEX to exclude "Undetermined" fastq files
- Support different input schema's for different demultiplexers HOT 1
- Update samplesheet in usage
- Demux dies for empty files HOT 4
- Add option to run CheckQC after demultiplexing with bcl2fastq HOT 2
- MultiQC report is empty HOT 2
- Update the citation tools
- Add samplesheet generation
- [Question]: Upgrading bcl-convert to 4.2.4 HOT 5
- test profile fails with singularity HOT 1
- No fastq.gz in NA folder after usage of --skip_tools "falco,fastp" HOT 2
- bcl-convert setting of --bcl-num-parallel-tiles causes very poor performance HOT 5
- Some singularity images are missing when using `nf-core download demultiplex` HOT 4
- Falco result for single End FastQ cannot show in the MultiQC report HOT 1
- Issue with AWS and NfcoreTemplate.groovy HOT 1
- nf-core documentation error
- URGENT: pin nf-validation version HOT 4
- Individual Multiqc reports per lane / flow cell HOT 1
- Reads dropped when demultiplexing a sample across lanes.
- Add demultipexing for MGI sequencing machines
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