Related Issues (20)
- Create outputs readable by e.g. TissUUmaps, Loupe
- Module compilation error - cause: unable to resolve class JsonSlurper HOT 2
- Module compilation error HOT 2
- Add documentation for "Analysis options" in `usage.md` HOT 1
- Is Space Ranger Cytassist supported? HOT 2
- Implement tests using nf-test HOT 1
- Update spaceranger to 2.x HOT 8
- It should be possible to provide manual image alignments on a per-sample basis
- Add SpatialData as output HOT 20
- Add MultiQC report HOT 12
- Add checks for QC filtering HOT 2
- Auto-detection of samplesheet type HOT 1
- Full-size test dataset
- Version exporting of `leidenalg` and `SpatialDE` does not work
- Aggregate samples into single object HOT 4
- Rename the pipeline HOT 1
- Missing SpatialDE package in Docker container for ST_SPATIAL_DE process HOT 3
- Use `to_legacy_anndata` function from `spatialdata_io` instead of custom code HOT 1
- Option to use the `--unknown-slide` parameter in `spaceranger count` HOT 1
- MultiQC 1.21 doesn't support genomic_dna section HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from spatialvi.