Comments (3)
fasterius
commented on August 19, 2024
Images for single-tool containers have been added, but something more advanced is needed for more complex Python (and R) environments.
from spatialvi.
fasterius
commented on August 19, 2024
Temporary Docker images have been created in #17 for the more complex environments, but we should check if there is a more optimal solution.
from spatialvi.
apeltzer
commented on August 19, 2024
One possibility is to actually create a mulled container for processes (multi container) via bioconda for these. Then you do not need to build and host your own. This is entirely possible with your current setup, as the recipes are already used anyways :-)
from spatialvi.
Related Issues (20)
- Create outputs readable by e.g. TissUUmaps, Loupe
- Module compilation error - cause: unable to resolve class JsonSlurper HOT 2
- Module compilation error HOT 2
- Add documentation for "Analysis options" in `usage.md` HOT 1
- Is Space Ranger Cytassist supported? HOT 2
- Implement tests using nf-test HOT 1
- Update spaceranger to 2.x HOT 8
- It should be possible to provide manual image alignments on a per-sample basis
- Add SpatialData as output HOT 20
- Add MultiQC report HOT 12
- Add checks for QC filtering HOT 2
- Auto-detection of samplesheet type HOT 1
- Full-size test dataset
- Version exporting of `leidenalg` and `SpatialDE` does not work
- Aggregate samples into single object HOT 4
- Rename the pipeline HOT 1
- Missing SpatialDE package in Docker container for ST_SPATIAL_DE process HOT 3
- Use `to_legacy_anndata` function from `spatialdata_io` instead of custom code HOT 1
- Option to use the `--unknown-slide` parameter in `spaceranger count` HOT 1
- MultiQC 1.21 doesn't support genomic_dna section HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from spatialvi.