Exception: diamond error! error code: -11 about bakta

[oschwengers]

Thanks @simone-pignotti for the heads-up.
@jjpadilla1987 could you check, if downgrading Diamond to v2.1.8 solves the error in case, as well?

[pcrxn]

I'm experiencing the same error when attempting to analyze GCA_003339035.1, and I can also confirm that downgrading Diamond to v2.1.8 fixes the error. See bakta_diamond-2.1.9.stdout.txt and bakta_diamond-2.1.8.stdout.txt attached.

[simone-pignotti]

Hi, I am running into the same issue. Downgrading Diamond from 2.1.9 (released last week) to 2.1.8 has solved the problem for me, but looking at the changelog for 2.1.9 I don't see any breaking changes which might be at the root of this...

[jjpadilla1987]

Hi @simone-pignotti and @oschwengers,

Thanks for the suggestions. I installed diamond 2.1.8 and the analysis worked!

[oschwengers]

FYI, this bug is occurring in Diamond and it has been reported upstream. A downgrade to v2.1.8 is currently the best we can do until this is fixed.

bbuchfink/diamond#785

[oschwengers]

FYI: I temporarily pinned Diamond to v2.1.8 in the Bakta Bioconda package: bioconda/bioconda-recipes#46111