Comments (6)
Thanks @simone-pignotti for the heads-up.
@jjpadilla1987 could you check, if downgrading Diamond to v2.1.8
solves the error in case, as well?
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I'm experiencing the same error when attempting to analyze GCA_003339035.1, and I can also confirm that downgrading Diamond to v2.1.8
fixes the error. See bakta_diamond-2.1.9.stdout.txt and bakta_diamond-2.1.8.stdout.txt attached.
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Hi, I am running into the same issue. Downgrading Diamond from 2.1.9 (released last week) to 2.1.8 has solved the problem for me, but looking at the changelog for 2.1.9 I don't see any breaking changes which might be at the root of this...
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Hi @simone-pignotti and @oschwengers,
Thanks for the suggestions. I installed diamond 2.1.8 and the analysis worked!
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FYI, this bug is occurring in Diamond and it has been reported upstream. A downgrade to v2.1.8
is currently the best we can do until this is fixed.
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FYI: I temporarily pinned Diamond to v2.1.8
in the Bakta Bioconda package: bioconda/bioconda-recipes#46111
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