Comments (2)
Dear Fuyou,
You must be using a very standardized dataset. Your results are super good! The misclassification rate is even lower than the curated library (0.1%-2%).
To answer your question, no EDTA does not have the functionality to identify low complexity sequences or tandem repeats. You may use RepeatMasker to do so.
Best,
Shujun
from edta.
Thanks.
Fuyou
from edta.
Related Issues (20)
- Evaluating the results of an already finished EDTA pipeline run HOT 1
- ERROR:EDTA.pl line 583 HOT 5
- TIR-Learner does not run properly in EDTA v2.2.0 HOT 11
- LTR retriever fails HOT 5
- LINE search takes much longer compared to other steps HOT 3
- resubmit jobs HOT 1
- Rerun EDTA 2.2.0 with results from older version HOT 8
- PanEDTA Line Detection HOT 1
- 2024-01-30 02:12:48,620 -WARNING- Grid computing is not available because DRMAA not configured properly: HOT 1
- TIR filtration HOT 3
- EDTA crahed after no SINE found HOT 6
- Benefit of using panEDTA HOT 1
- Testing output HOT 3
- EDTA_2.2.x.yml seems not working HOT 7
- Concatinating CDS files for panEDTA HOT 1
- making the output gff3 valid HOT 4
- Exploring the Discrepancies between TEanno.gff3 and TElib.fa HOT 2
- Inflated TE counts and masked bp in EDTA annotation after removal of part of the genome HOT 3
- panEDTA for metazoans HOT 5
- the pipeline about panEDTA HOT 6
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from edta.