Testing output about edta

[Mosy135]

Encountered same error, mamba install version failed in testing. Cloned git repository together with this env works fine
mamba create -n EDTA2.2 -c conda-forge -c bioconda -c r annosine2 biopython cd-hit coreutils genericrepeatfinder genometools-genometools glob2 h5py==3.9 keras==2.11 ltr_finder ltr_retriever mdust multiprocess muscle openjdk pandas perl perl-text-soundex pyarrow python r-base r-dplyr regex repeatmodeler r-ggplot2 r-here r-tidyr scikit-learn swifter tensorflow-cpu==2.11 tesorter samtools bedtools grep

[oushujun]

Hello,

Sorry for the delay response. Please update your repo and try with the updated yml file. It should be able to install without the CUDA dependency.

Best,
Shujun

[rpetroll]

Hi Shujun,

I am also getting the same error as described above. I also tried using the updated yml file, but still getting the same error and 0 Bp files for LINEs and SINEs. I also tried the container 2.2.0--hdfd78af_1, also here it is the same error.

I am very thankful for any advice.
Thank you!
Romy

[oushujun]

You can use the following mamba command to install EDTA:
mamba create -n EDTA2.2 -c conda-forge -c bioconda -c r annosine2 biopython cd-hit coreutils genericrepeatfinder genometools-genometools glob2 h5py==3.9 keras==2.11 ltr_finder ltr_retriever mdust multiprocess muscle openjdk pandas perl perl-text-soundex pyarrow python r-base r-dplyr regex repeatmodeler r-ggplot2 r-here r-tidyr scikit-learn swifter tensorflow-cpu==2.11 tesorter samtools bedtools grep

The bioconda and docker/singularity version is not yet updated. As EDTA2 is actively being developed, it's good to pull the github every while to get the latest version.

Thanks!
Shujun