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arborator

asipython

Python library that calculates viral drug resistance interpretations/scores based on given algorithm and mutation list files

ay25ay27

Builds and sequence lists for virological

biocanon

SNP typing scheme development tools

bioconda-recipes

Conda recipes for the bioconda channel.

biohansel

Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes

biohansel-manuscript-supplementary-data

BioHansel manuscript supplementary data

camda19-lassoreg

Scripts created for the CAMDA2019 manuscript: DOI: 10.21203/rs.3.rs-15502/v1 Systematic evaluation of supervised machine learning for sample origin prediction using metagenomic sequencing data Chih-yu Chen, Andrea D. Tyler

changelings

changeLINGs: changing of SARS-CoV-2 LINeaGes through time

cladeomatic

SNP population structure detection

cladeomatic_benchmarks

Repository for testing Clade-O-Matic

cluster_dists

Summarizing pairwise distances within categorical groupings'

clustersplitter

EPS suite Arborator pipeline

covid-19-consensus

Generate Sars-CoV2 sequence metrics from fasta file inputs

covid-19-signal-nml

Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.

covid_data_science_misc

Data science scripts on COVID related things

cryptogenotyper

CryptoGenotyper is a tool that allows for subtyping the parasite, Cryptosporidium

dataharmonizer

dynamic-tool-destination

More fine grained tool destination mapping for Galaxy.

ecoli_serotyping

In silico prediction of E. coli serotype

ecoli_vf

Curated virulence factors for Escherichia coli.

epivizor

Epidemiological web application for visual data analytics

fetchdatairidanext

Pipeline for downloading data from INSDC databases for IRIDA Next.

ga4gh-starter-kit-wes

Starter Kit server implementation of the GA4GH Workflow Execution Service (WES) specification

galaxy

Data intensive science for everyone.

galaxy_tools

Contains a set of Galaxy Tools mostly written by the Bioinformatics core at NML

gasclustering

gasnomenclature

Nomenclature assignment pipeline

genomic_address_service

Package for clustering sequences de novo and assignment to existing nomenclature

gnali

gene Nonessentiality And Loss-of-function Identifier