phac-nml Goto Github PK

mykrobe-parser

R Script to parse the results of mykrobe predictor and present them in a LIMS compatible format.

nanostripper

Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria

ncbi_data_retrieval

Access SRA Skesa assemblies

ncov

Nextstrain build for novel coronavirus SARS-CoV-2

ncov-dehoster

Removal of human reads from ncov nanopore sequencing data

ncov2019-artic-nf

A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

neptune

Neptune: Genomic Signature Discovery

neptune-manuscript

Supporting files for the Neptune manuscript.

nf-core-staramr

nf-core StarAMR

nf-gas-clustering

Clustering workflow utilizing the Genomic Address Service (GAS)

nf-gas-nomenclature

Assign a stable nomenclature based off allele profiles

nf-iridanext

Plugin for integration of Nextflow pipelines with IRIDA Next.

nf-pipelines

nf-plugins-phac-nml

ngstar

nml_nowcast

pavian

Analyze and visualize metagenomics classification results from the comfort of Galaxy

pico_galaxy

Galaxy tools and wrappers for sequence analysis

pipeline-standards

Guidelines for developing Nextflow pipelines for IRIDA Next.

plasmid_analysis

Analysis and visualization tools for plasmids

plasmidprofiler

plasmidprofiler-galaxy

primer-schemes

Schemes for SarsCoV2 sequencing

profile_dists

Profile Dists: Convenient package for comparing genetic similarity of samples based on allelic profiles

profile_splitter

Tool for splitting allelic profiles into different groups based on defined partitions

proteomics4amr

pubs2015

Prairie University Biology Symposium 2015

puppet-cvmfs

Puppet module for cvmfs

puppet-irida

The IRIDA module lets you use Puppet to install, deploy, and configure IRIDA web server (Alpha status)

puppet-jupyterhub

Puppet module to deploy a JupyterHub that submits job to Slurm