phac-nml Goto Github PK
Name: National Microbiology Laboratory
Type: Organization
National Microbiology Laboratory's Projects
irida-documentation
IRIDA Application Documentation
irida-fastqc
A quality control analysis tool for high throughput sequencing data
irida-galaxy-importer
A tool for importing data from IRIDA into Galaxy
irida-linker
A command-line tool for exporting data from IRIDA to the command line
irida-miseq-uploader
A GUI tool for uploading sequencing data from the Illumina MiSeq instrument to IRIDA
irida-next
IRIDA Next
irida-pipeline-plugins
A list of pipeline plugins available for IRIDA
irida-plugin-amr-detection
IRIDA Plugin for AMR Detection
irida-plugin-ectyper
IRIDA plugin for ecTyper (E.coli in silico typing)
irida-plugin-example
An example pipeline plugin for IRIDA.
irida-plugin-sistr
IRIDA Plugin for SISTR Salmonella Typing Tool
irida-plugin-staramr
irida-sistr-results
Compile results generated from SISTR within IRIDA
irida-staramr-results
Enables StarAMR analysis results that were run through IRIDA to be downloaded into a spreadsheet using the command line.
irida-uploader
Sequence file uploader for IRIDA
irida-uploader-tutorial
Tutorials for IRIDA Uploader https://github.com/phac-nml/irida-uploader
irida-uploader-webapp
irida-wf-ga2xml
Create an IRIDA workflow from a Galaxy workflow file
iridanextexample
An example pipeline for running on IRIDA Next
june
June is a framework for agent based modelling in an epidemiological and geographical context.
jupyterkernelgen
krakefaction
A tool for generating rarefaction curve data from Kraken output.
locidex
Common search engine for similarity based typing applications
mab_mabscessus
The MAB MLST Scheme for Mycobacterium absecssus
mikrokondo
A simple pipeline for bacterial assembly and quality control
miniontoolkit
mob-suite
MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
monkeypox-nf
A monkeypox virus (MPXV) assembly pipeline using Nextflow for host-removal, reference-based assembly, and generation of sequence quality metrics for Illumina paired-end data using a shotgun metagenomic sequencing approach.
msaboot
A Python tool for generating bootstrapping data from multiple sequence alignments.
mutations-visualization
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