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genometools

GenomeTools genome analysis system.

genometools_singularity

gffkit

A lightweight python toolkit for common manipulations on GFF3 files

gnt_paper

guppy_gpu_singularity

A Singularity file intended for SingularityHub, for the Oxford Nanopore Technologies guppy gpu caller. Based off https://hub.docker.com/r/genomicpariscentre/guppy/dockerfile

hardware

eVOLVER Hardware (PCB, 3D printed parts)

insdc-pipeline

SnakeMake pipeline to run BlobTools on public assemblies

interproscan_to_enzyme_go

ir-maldesi-ms

Open source CAD models and C# software for making a low-cost IR-MALDESI instrument

juicebox

Software for visualizing data from Hi-C and other proximity mapping experiments

juicer

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

jupyter_notebooks

My personal Jupyter notebooks.

jupyverse

A Jupyter server based on FastAPI

kozak_extract_nextflow

libfive

Infrastructure for solid modeling

luciferase-ppx-predictor-nf

A Nextflow pipeline to try and automate some aspects of luciferase gene ab inito structure prediction

macports-ports

The MacPorts ports tree

maker_gff_to_evm_gff_2017

ms2_graph

msdk

MSDK source code repository

mview

MView extracts and reformats the results of a sequence database search or multiple alignment.

mzmine2

MZmine 2 source repository

mzmine3

MZmine 3 source repository (unstable, for developers only)

mzmlkit

ncbi_sra_subscribe_bot

This is a python bot that emails you when new sequencing data from SRA is available

nextflow

A DSL for data-driven computational pipelines

nextflow-venetian-siam

oddgenes

A small database of really weird gene annotations

omgene

Mutual optimisation of gene models through gene orthology

orthofinder

Accurate inference of orthologous gene groups made easy. "OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthologous gene group inference accuracy"