pneerincx / ngs-utils

Collection of notes and scripts related to NGS

ngs-utils

Collection of notes and scripts related to NGS.

Make git work on our cluster:

Via https:

git clone https://github.com/YOUR_USER_NAME/ngs-utils.git

Via ssh:

NB This does not work yet. Probably we have to upgrade our git module?

Look up your git email (go to github.com, click your photo / settings / email).

cd
module load git/1.9.3
ssh-keygen -t rsa -b 4096 -C "[email protected]"
mkdir git

git clone [email protected]:YOUR_USER_NAME/ngs-utils.git


cd ngs-utils
git config --global user.name "YOUR NAME"
git config --global user.email "YOUR EMAIL ADDRESS"

eval "$(ssh-agent -s)"     # start ssh-agent in bg
ssh-add ~/.ssh/id_rsa      # add your key to the ssh-agent

Now copy the public key (~/.ssh/id_rsa.pub) exactly without adding newlines or whitespace to your clipboard!

On github.com, click you photo, goto settings / Add SSH-key, and add the key and test your connection:

ssh -T [email protected]