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rabbitmash

RabbitMash: an efficient highly optimized implementation of Mash.

racon

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116

racon-1

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads

rad_analysis_workflow

A bioinformatics protocol for analysing genotypes using restriction site associated DNA sequencing data

radsex

Analysis pipeline to find sex signal in RADSeq data

ragoo

Fast Reference-Guided Scaffolding of Genome Assembly Contigs

rails

RAILS and Cobbler

rainbow_csv

🌈CSV - Vim plugin: Highlight columns in CSV and TSV files and run queries in SQL-like language

rampart

Read Assignment, Mapping, and Phylogenetic Analysis in Real Time

raptor

Graph-based mapping of long sequences, noisy or HiFi.

rasflow

RNA-Seq analysis workflow

rasusa

Randomly subsample sequencing reads to a specified coverage

raven

rboanalyzer

Tool for analysing BLAST output for ncRNA sequences

rcartocolor

Implementation of the CARTOcolor palettes in R

rcgrep

Search text files for DNA sequences and their reverse complements

read-spam

Read-SpaM: assembly-free and alignment-free comparison of bacterial genomes with low sequencing coverage

read_haps

Detects human contamination in bam files

readfish

Read Until scripts

readingpapers

A guide to reading scientific papers

readucks

Nanopore read de-multiplexer

rearrvisr

An R package to detect, classify, and visualize genome rearrangements

recentrifuge

Recentrifuge: robust comparative analysis and contamination removal for metagenomics

recount

Code for analyzing REcount barcode sequencing data.

reditools

REDItools are python scripts to investigate RNA editing at genomic scale.

redoc

Reversible Reproducible Documents

referee

Reference genome quality scores

refgenie

Reference genome resource manager

refinebio-examples

Example workflows for refine.bio data

refinem

A toolbox for improving metagenome-assembled genomes.