pythseq Goto Github PK

champ

cheatsheets

RStudio Cheat Sheets

checkm

Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes

checkm2

Assessing the quality of metagenome-derived genome bins using machine learning

chenlab-ncrna.github.io

chewbacca

A bioinformatics toolkit for COI analysis

chipseq

Chromatin immunoprecipitation (ChIP-seq) analysis pipeline using BWA and MACS2 with multiple QC outputs.

chm-eval

chm13

Ultra-long reads for CHM13 genome assembly

chromatiblock

Colinear block visualisation tool

circlator

A tool to circularize genome assemblies

circleator

Flexible circular visualization of genome-associated data with BioPerl and SVG.

circlize

Circular visualization in R

cirgo

clair

Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling

clairvoyante

Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

clame

CLAME:"Clasificador Metagenomico"

claragenomicsanalysis

SDK for GPU accelerated genome assembly and analysis

classifier

RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s

clean_ipynb

cleanup messy jupyter notebooks

clevercsv

CleverCSV is a Python package for handling messy CSV files

clincnv

Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data

closecall

Proximity RNA-Pipeline

cloudasm

clustergrammer-docs

The documentation for the Clustergrammer project

cmdstan_map_rect_tutorial

Beginner tutorial for using cmdstan with multithreading

cnci

Coding-Non-Coding Index (CNCI)

cnvrd2

co-arbitrator

Source, executables and data files for CO-ARBitrator COI auto-curation algorithm

co-transcriptomics

Co-transcriptome analysis of plants and commensal bacteria