pythseq Goto Github PK

antimicrobial-peptides

Collecting AMP MIC data from different sources, then running a GAN to output promising sequences

anvio

An analysis and visualization platform for 'omics data

apc

(a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join

apscale

Advanced Pipeline for Simple yet Comprehensive AnaLysEs of DNA metabarcoding data

apscale_gui

Advanced Pipeline for Simple yet Comprehensive AnaLysEs of DNA metabarcoding data

arbanker

Download metadata from the CDC and FDA AR Isolate Bank

arg-mob

ariba

Antimicrobial Resistance Identification By Assembly

arks

Scaffold genome assemblies with 10x Genomics Chromium reads

artemis

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

as_apa_jove

rmatsuite

assemblathon2-analysis

collection of scripts and commands used by Ian Korf, Keith Bradnam, and Joe Fass in the analysis of Assemblathon 2 entries (assemblies)

assembler-components

Components of genome sequence assembly tools

assemblerflow

A Nextflow pipeline assembler for genomics :whale::package:

assembly-dereplicator

A tool for removing redundant genomes from a set of assemblies

assemblytics

Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference genome.

asset

assembly evaluation tool

astral

Accurate Species TRee ALgorithm

astrobiomike.github.io

Site to help biologists wade their way into bioinformatics.

atlas

:earth_americas: ATLAS - a framework for assembly, annotation, and genomic binning of metagenomic and metatranscriptomic data.

augur

Cell type prioritization in single-cell data

augur-1

Pipeline components for real-time phylodynamic analysis

august-2019-consensus-accuracy-update

A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies

auth0

Authentication in shinyapps using Auth0 service

autoclick

Create Click-based CLIs from python3 type annotations

autowig

Automatic Wrapper and Interface Generator

awesome

:sunglasses: Curated list of awesome lists

awesome-1

Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.

awesome-bioinformatics

A curated list of awesome Bioinformatics libraries and software.

awesome-cheatsheets

👩‍💻👨‍💻 Awesome cheatsheets for popular programming languages, frameworks and development tools. They include everything you should know in one single file.