rlugojr / deepwalk

DeepWalk - Deep Learning for Graphs

DeepWalk

DeepWalk uses short random walks to learn representations for vertices in graphs.

Usage

Example Usage

$deepwalk --input example_graphs/karate.adjlist --output karate.embeddings

--input: input_filename

1. --format adjlist for an adjacency list, e.g:

   1 2 3 4 5 6 7 8 9 11 12 13 14 18 20 22 32
   2 1 3 4 8 14 18 20 22 31
   3 1 2 4 8 9 10 14 28 29 33
   ...
   

2. --format edgelist for an edge list, e.g:

   1 2
   1 3
   1 4
   ...
   

3. --format mat for a Matlab MAT file containing an adjacency matrix

   (note, you must also specify the variable name of the adjacency matrix --matfile-variable-name)

--output: output_filename

The output representations in skipgram format - first line is header, all other lines are node-id and d dimensional representation:

34 64
1 0.016579 -0.033659 0.342167 -0.046998 ...
2 -0.007003 0.265891 -0.351422 0.043923 ...
...

Full Command List

The full list of command line options is available with $deepwalk --help

Requirements

• numpy
• scipy

(may have to be independently installed)

Installation

1. cd deepwalk
2. pip install -r requirements.txt
3. python setup.py install

Citing

If you find DeepWalk useful in your research, we ask that you cite the following paper:

@inproceedings{Perozzi:2014:DOL:2623330.2623732,
 author = {Perozzi, Bryan and Al-Rfou, Rami and Skiena, Steven},
 title = {DeepWalk: Online Learning of Social Representations},
 booktitle = {Proceedings of the 20th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining},
 series = {KDD '14},
 year = {2014},
 isbn = {978-1-4503-2956-9},
 location = {New York, New York, USA},
 pages = {701--710},
 numpages = {10},
 url = {http://doi.acm.org/10.1145/2623330.2623732},
 doi = {10.1145/2623330.2623732},
 acmid = {2623732},
 publisher = {ACM},
 address = {New York, NY, USA},
 keywords = {deep learning, latent representations, learning with partial labels, network classification, online learning, social networks},
}

Misc

DeepWalk - Online learning of social representations.

• Free software: GPLv3 license
• Documentation: http://deepwalk.readthedocs.org.