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Name: Rory Kirchner
Type: User
Bio: neuroscientist, bioinformatician and programmer
Twitter: RoryKirchner
Location: Branford, CT
Name: Rory Kirchner
Type: User
Bio: neuroscientist, bioinformatician and programmer
Twitter: RoryKirchner
Location: Branford, CT
Python module for analysis of CLAMS (comprehensive lab animal monitoring system) data
This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.
Emacs package to quickly find and act on bibliographic references, and edit org, markdown, and latex academic documents.
Copy number variant detection from targeted DNA sequencing
Repository for CWL Specifications. Use https://www.biostars.org/t/cwl/ for support.
The tool for managing conda-forge feedstocks.
CrossMap is a python program to lift over genome coordinates from one genome version to another.
A conda-smithy repository for curl.
My datasets - Original data or Aggregated / cleaned / restructured existing datasets. Released here under Creative Commons B
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Create a cromphensive report of DEG list coming from any analysis of RNAseq data
Source code to Delicious bookmarking site, pull requests welcome
Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem
don't get DUP'ed or DEL'ed by your putative SVs.
🔗 DVC website and documentation
utils functions for exome coverage plots as quality controls
Reproducible machine learning analysis of gene expression and alternative splicing data
Modern on the fly syntax checking for GNU Emacs
blacklist of fusion genes
Calculates the G-quadraplex score for a FASTA file of sequences
prioritize effects of variant annotations from VEP, SnpEff, et al.
classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
GFF and GTF file manipulation and interconversion
Collection of one off type scripts using a gffutils database
Graph-based alignment (Hierarchical Graph FM index)
:beer: The missing package manager for OS X.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.