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homebrew-cbl

Homebrew repository for CloudBioLinux: incubator for formulas to end up in homebrew-science

homebrew-science

:microscope: Scientific formulae for the Homebrew package manager

in-depth-ngs-data-analysis-course

Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.

incanter

Clojure-based, R-like statistical computing and graphics environment for the JVM

indrops

Pipeline for processing inDrops sequencing data

ipyparallel

Interactive Parallel Computing in Python

ipython

Official repository for IPython itself. Other repos in the IPython organization contain things like the website, documentation builds, etc.

ipython-cluster-helper

Tool to easily start up an IPython cluster on different schedulers.

isdb

A toolkit for creating databases of viral integration sites in host genomes

junkdrawer

collection of small scripts or how-tos that don't fall under a separate project

kallisto

Near-optimal RNA-Seq quantification

knowledgebase

General knowledge for HBC computing

laureates

Pick a random Nobel laureate

ldc-feedstock

A conda-smithy repository for ldc.

linuxbrew

A fork of Homebrew for Linux

mastermind

Find minimal colorings for immunostaining multiple celltypes simultaneously

methods

mirge

miRge - microRNA alignment software for small RNA-seq data, now at v2.0

miso

MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation

miso-hg38-events

hg38 event level annotations for use with MISO, translated from hg19 from Crossmap.

mjw-toolbox

a phial of holy water, one stained priest's collar, and a single sandalwood-handled six shooter.

monocle-release

mpraflow

A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

multiqc_bcbio

MultiQC plugin for bcbio_nextgen pipeline

multiqc_testdata

Test data for MultiQC. See https://github.com/ewels/MultiQC

mypubs

creation of methods with the purpose of tools comparison

nmf

NMF: A Flexible R package for Nonnegative Matrix Factorization

normpy

Normalization methods for RNA-Seq expression data in Python.

octopus

Bayesian haplotype-based mutation calling