Comments (3)
sokrypton
commented on July 29, 2024
For binder design. The target chains are are labelled as a single chain. this may result in some software like chimera to show them connected.
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MaoSihong
commented on July 29, 2024
用于粘结剂设计。目标链被标记为单个链。这可能会导致像Chimera这样的软件显示它们已连接。
wow, can we make any improvement upon this? i haven't look into the code, dont know how could it be improved
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MaoSihong
commented on July 29, 2024
用于粘结剂设计。目标链被标记为单个链。这可能会导致像Chimera这样的软件显示它们已连接。
to my knowledge the wrong connection seemed to have little influence upon the designed binder, can i still use the diffusion result by manually deleting the wrong part?
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Related Issues (20)
- RFdiffusion did not install GPU version of Pytorch in the environment without CUDA
- Is there a way to combine Inpainting and Fold Conditioning?
- Partial diffusion errors
- EEOR: Segmentation fault (core dumped) in the af2_binder_design environment
- CONTIG
- Flexible peptide error
- 10A Cbeta distance of the binder HOT 2
- Issue with controlling motif scaffold length?
- Error when running Scaffold guided Binder design.
- Is there a way to increase the weight of hotspots?
- is there a way to design multiple chain's 1 binder in same time? HOT 2
- can't access http://files.ipd.uw.edu/pub/RFdiffusion/... to download weights HOT 2
- RuntimeError: PytorchStreamReader failed reading zip archive: failed finding central directory
- In lab experiment, binding affinity is pretty strong, but pae_interaction is only around 28 HOT 10
- problems installing from env/SE3nv.yml HOT 2
- curious to know whether only 3-helix binder protein could be design if using scaffold-based binder design.
- Traceback (most recent call last) HOT 1
- Symmetry option model_only_neighbors functional?
- pyRosetta not found for Fold conditioning design HOT 1
- Design small molecule binding proteins [potentials.guiding_potentials] HOT 2
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