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andreasntr avatar andreasntr commented on May 2, 2024 2

This is the actual reason for which I opened the issue. Complex modeling is not feasible (looking at the provided instructions) even between two proteins if at least one them has more than one chain

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LW-meng avatar LW-meng commented on May 2, 2024 1

I encounter a similar problem. In my case, I need to model the complex of viruses and antibody, but antibody has two sequences(light and heavy chain).
Is there any solution for this case? Many Thanks!

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callahak avatar callahak commented on May 2, 2024

What is the difference between bacterial and eukaryotic alignment that makes eukaryotic harder? How does a eukaryotic multi sequence alignment created from the same make_msa.py script differ from a bacterial one so that it can't be used as input for make_joint_MSA_bacterial.py?

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