Comments (4)
william-silversmith
commented on July 3, 2024
The code you referenced looks correct to me. Are you sure you're getting some mask_ids back? Maybe try a bigger dust_threshold, 50 is very small (a 4x4x4 cube is bigger). I often go as high as 1000.
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selvakarna
commented on July 3, 2024
Hi @william-silversmith ,
if i increase threshold as 10000 , its error. can you share sample code remove , unwanted small 3d volume?
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william-silversmith
commented on July 3, 2024
Can you share the error? The code you were using looked good to me. If you want to try something else, you can give https://github.com/seung-lab/fastremap/ a try.
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selvakarna
commented on July 3, 2024
Okay @william-silversmith
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Related Issues (20)
- Applying Dust and largest_k dtype output option HOT 2
- dust sugnature HOT 1
- Massive memory Leak HOT 7
- 1D Array of 4 Elements Incorrect HOT 5
- Cannot find reference 'dust' in 'cc3d.py' HOT 2
- Question on comparing individual lesions between two masks based on the cc3d.statistics output. HOT 1
- Additional metrics support HOT 2
- Does cc3d also work with memmory-mapped numpy arrays and array-like data? HOT 14
- cc3d.statistics["bounding_boxes"] are wrong HOT 1
- largest_k fails for transposed arrays HOT 6
- About the lastest_k function HOT 4
- Statistics output HOT 7
- Question on the output of contacts HOT 9
- Periodic Boundary Conditions HOT 4
- Is the output label of largest_k ordered? HOT 2
- Add a better error for type support. HOT 4
- Any way to make this GPU Compatible? HOT 5
- Applying dust to labels does not do anything HOT 3
- Support for Numpy 2.0 HOT 3
- cc3d.dust fails HOT 3
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