smestern / pyapisolation

Feature Extraction and Other tools for Patch-Clamp electrophysiology data

pyAPisolation

This package facilitates batch feature extraction and data dashboarding of ABF files. Primarily written for Inoue Lab @ western university. The package is able to output feature arrays and/or raw current traces from the file(s). The module piggy backs off of some of the excellent work found in the pyABF & ipfx packages.

Installation

To install run pip install git+https://github.com/smestern/pyAPisolation

Basic use

To run simple analysis on your files. navigate to the /bin folder and run:

python run_APisolation.py

This will prompt you to select your files for analysis. The script will create an output folder for your traces.

GUI

To run simple analysis with gui on your files. navigate to the /bin folder and run:

python run_APisolation_GUI.py

Advanced use

//todo