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tkonopka avatar tkonopka commented on May 11, 2024

Hi @umasstr. Yes, the output is supposed to be an S3 object. If you are getting a matrix, is it possible that you loaded package uwot after loading package umap? (Package uwot performs dimensional reduction in a similar way, but it has slightly different features and API.) If that's the case, and if you want to keep using both packages in the same R session, you can still run umap from this package by calling umap::umap(b).

from umap.

umasstr avatar umasstr commented on May 11, 2024

Wow, I wouldn't have thought of that. All set—runs quickly and without error or warning.
Thanks, and happy holidays!

from umap.

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