Topic: batch-effects Goto Github
Some thing interesting about batch-effects
Some thing interesting about batch-effects
batch-effects,Embedding to Reference t-SNE Space Addresses Batch Effects in Single-Cell Classification
Organization: biolab
batch-effects,An implementation of MNN (Mutual Nearest Neighbors) correct in python.
User: chriscainx
batch-effects,NewWave
User: fedeago
batch-effects,Batch effect adjustment based on negative binomial regression for RNA sequencing count data. Credits: https://github.com/zhangyuqing/ComBat-seq
Organization: genepattern
batch-effects,Detecting hidden batch factors through data adaptive adjustment for biological effects
User: haidyi
batch-effects,BEER: Batch EffEct Remover for single-cell data
User: jumphone
batch-effects,Visualization and analysis of single-cell RNA-seq data by alternative clustering
Organization: kchen-lab
batch-effects,Unbiased integration of single cell transcriptomes.
User: martinloza
Home Page: https://martinloza.github.io/Canek/
batch-effects,
User: mbongaerts
batch-effects,Package for analyzing batch effects in single cell RNA sequencing (scRNA-seq) analysis and predicting their impact on downstream analysis.
User: mrcschwering
batch-effects,Analyzing batch effects in single cell RNA sequencing (scRNA-seq) analysis and predicting their impact on downstream analysis.
User: mrcschwering
batch-effects,Uses regression and factor model approach to correct for site effects in fMRI volumes
Organization: neuroquant
batch-effects,This repository contains iPython notebooks that run on the octave kernel to accompany tutorial and slides presented at PRNI
Organization: neuroquant
batch-effects,Wrapper of batch removal method for scRNA-seq
User: nkimoto
batch-effects,Imputation method for scRNA-seq based on low-rank approximation
User: pavlin-policar
batch-effects,RZiMM: A Regularized Zero-inflated Mixture Model for scRNA-seq Data
User: skadieye
batch-effects,R script and Shiny app to perform stratified randomisation
Organization: slinghub
Home Page: https://slinghub.shinyapps.io/StratiRandom_Shiny/
batch-effects,batchtma: R package to adjust for batch effects, for example between tissue microarrays
User: stopsack
Home Page: https://stopsack.github.io/batchtma
batch-effects,Code accompanying batch effects processing workflow for "omic" data, mainly targeted for proteomics
User: symbioticme
batch-effects,Tools for Batch Effects Diagnostics and Correction
User: symbioticme
batch-effects,Mitigating the adverse impact of batch effects in sample pattern detection
User: tengfei-emory
Home Page: https://cran.r-project.org/package=QuantNorm
batch-effects,Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment
User: tengfei-emory
batch-effects,An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
Organization: theislab
batch-effects,RADseq Data Exploration, Manipulation and Visualization using R
User: thierrygosselin
Home Page: https://thierrygosselin.github.io/radiator/
batch-effects,Correction of batch effects in DNA methylation data
Organization: uds-helms
Home Page: https://bioconductor.org/packages/release/bioc/html/BEclear.html
batch-effects,Correction of batch effects with BEclear as a command line tool
Organization: uds-helms
batch-effects,A question that is specific to the twin design concerns the manner of allocation of twins to batches. One may allocate randomly by individual twin, or randomly by twin pair. The following are the results of simulation studies carried out to answer this question in three situations. Simulation 1. Random effects model. Simulation 2: fixed batch effects in two steps or one step. Simulation 3: More extreme selection and fixed plate effects in two step or one step. Simulation 4: estimating genetic and non-genetic variance components in the twin design.
User: vikaodin
batch-effects,Batch effect adjustment based on negative binomial regression for RNA sequencing count data
User: zhangyuqing
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