Topic: spatial-omics Goto Github
Some thing interesting about spatial-omics
Some thing interesting about spatial-omics
spatial-omics,Multimodal Variational Autoencoder dedicated to omics data integration
User: annkamsk
spatial-omics,R package to visualize colocalization for single cell & spatially-resolved genomics data
User: boyiguo1
Home Page: https://boyi-guo.com/escheR/
spatial-omics,A Python package for the Scalale and accurate identification condition-relevant niches from spatial -omics data.
User: c0nc
spatial-omics,Technology-invariant pipeline for spatial omics analysis (Xenium / MERSCOPE / CosMx / PhenoCycler / MACSima / Hyperion) that scales to millions of cells
Organization: gustaveroussy
Home Page: https://gustaveroussy.github.io/sopa/
spatial-omics,Cell-type Relationship Analysis Workflow Done Across Distances
Organization: jefworks-lab
Home Page: https://jef.works/CRAWDAD
spatial-omics,Spatial Experiments raster - a rasterization preprocessing framework for scalable spatial omics data analysis
Organization: jefworks-lab
Home Page: https://jef.works/SEraster/
spatial-omics,Perform RESTORE normalization on multiplexed imaging data.
User: larry080201
spatial-omics,ClusterMap for multi-scale clustering analysis of spatial gene expression
Organization: liulab-bioelectronics-harvard
spatial-omics,End-to-end analysis of spatial multi-omics data
Organization: lotfollahi-lab
Home Page: https://nichecompass.readthedocs.io/
spatial-omics,Spatial analysis toolkit for single cell multiplexed tissue data
User: mr-milk
Home Page: https://spatialtis.readthedocs.io/en/latest/
spatial-omics,BANKSY: spatial clustering
User: prabhakarlab
Home Page: https://prabhakarlab.github.io/Banksy
spatial-omics,Interoperability between SpatialData and the Xenium Explorer
User: quentinblampey
Home Page: https://quentinblampey.github.io/spatialdata_xenium_explorer/
spatial-omics,Interactive visualization of spatial omics data
Organization: scverse
Home Page: https://spatialdata.scverse.org/projects/napari/en/latest/
spatial-omics,Dependency-aware deep generative models for multitasking analysis of spatial genomics data
User: ttgump
spatial-omics,ClusterMap for multi-scale clustering analysis of spatial gene expression
Organization: wanglab-broad
spatial-omics,A Lightweight & Versatile Visualization Tool for Spatial-Omics Data
User: yezhenqing
Home Page: https://yezhenqing.github.io/spatial-live/
spatial-omics,conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics
User: ys-zong
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