Questions about creating "query_peptide.fasta" and "target_peptide.fasta" about camp

[twopin]

You can use try some python cmds to convert sequence files into fasta (like try to identify the sequence name by starting with '>' and the next line should be the aa sequence.

[AnthonyYao7]

Hi
Thanks for your response! I did that. An example would be:

1qkz_P
ANGGASGQVK

I run this through pyssw.py using the command listed in readme and the output file has this structure:
target_name: 1qkz_P
query_name: 5wrl_P
optimal_alignment_score: 5
strand: +
target_end: 6
query_end: 6

However, when I run this through target-mapping.py, it fails to run. After modifying the code to run, the function get_result_dict returns an empty dictionary. Is the output of pyssw.py in the wrong format?

[a30221274]

Hello

I've encountered a similar issue after running pyssw.py. May I ask how you managed to resolve it?