Comments (3)
The python3 +pytorch script and ckpts are under in "CAMP_pytorch".
from camp.
I am still facing problem to run this application. I am receiving some files are missing. For example, I can't find datafile. I am not professional code side maybe I am missing some of the steps. If we can quick chat to understand this application, it might perfect for me. Because I am planning to use your code in my thesis. But I can't get any output and I can't make any presentation about this. [email protected] and I am happy to talk on the phone if you have time to small help.
Best Regards,
Deniz
from camp.
Sure. My email is [email protected] and if you need some help we can schedule a zoom meeting or something like that. I can quickly introduce the workflow. There are indeed some filenames you need to change with your own data or intermediate feature files. And I think you need to have basic python knowledge to manipulate your data format.
from camp.
Related Issues (20)
- How to train my own models HOT 5
- Running CAMP on own data HOT 7
- Could you check PLIPv2.2.2 output vs v1.4.2? current codes only for PLIPv1.4.2? HOT 1
- About blast database HOT 1
- Questions about creating "query_peptide.fasta" and "target_peptide.fasta" HOT 3
- step2_pepBDB_pep_bindingsites.py 'df_part_all' is not defined HOT 1
- dataset HOT 2
- error in preprocessing features HOT 3
- peptide_dense_feature_dict generated by step3 has only two features per AA whereas given example data has three features per AA
- interpretion of results HOT 1
- error in CAMP_BS.h5 modelling HOT 5
- Failed to predict protein-peptide interactions in PPD-bench HOT 3
- Unknown loss function: conditional_BCE; predict_CAMP.py HOT 1
- Request for Guidance in Step 1 to Step 3 of step2_pepBDB_pep_bindingsites.py
- can not load 'CAMP_BS.h5' successfully HOT 4
- problem unpickling CAMP_pytorch files HOT 3
- analyzed file generated by PLIP HOT 1
- Step 4 of step1_pdb_process.py
- "query_peptide.fasta" and "target_peptide.fasta" HOT 2
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