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Volker Hilsenstein's Projects

projects icon projects

Small projects not worthy of dedicated repositories

publication_template icon publication_template

A template for writing scientific papers. View it in action here: https://andrewgyork.github.io/publication_template/

publiccontributedcellprofilermodules icon publiccontributedcellprofilermodules

I will use this repository for contributed CellProfiler modules. Just download them and set your plugin path in the preferences accordingly. Note that these are not thoroughly tested. Use at your own risk.

pydantic icon pydantic

Data parsing and validation using Python type hints

pydecon icon pydecon

Image deconvolution algorithms in python

pygrahamscan icon pygrahamscan

A python implementation of Graham's scan for convex hull

pyotf icon pyotf

python functions for simulating optical transfer functions

pyradiomics icon pyradiomics

Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks.

pytorch-3dunet icon pytorch-3dunet

3D U-Net model for volumetric semantic segmentation written in pytorch

radio icon radio

RadIO is a library for data science research of computed tomography imaging

reloading icon reloading

Change Python code while it's running using a reloading loop

remark icon remark

A simple, in-browser, markdown-driven slideshow tool.

remote_refocus icon remote_refocus

A scientific publication, describing a way to improve microscopy. This repository hosts everything you need to reproduce our results. Read the publication here: https://andrewgyork.github.io/remote_refocus/

scikit-fmm icon scikit-fmm

scikit-fmm is a Python extension module which implements the fast marching method.

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