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This developer repository contains the latest version of the source code of XMapTools (development version; pre-release candidates; no stable version)

Home Page: https://xmaptools.ch

License: GNU General Public License v3.0

MATLAB 31.00% HTML 26.04% Bikeshed 42.96%
xmaptools image-processing machine-learning calibration standardization segmentation data-vizualization matlab

xmaptools_developers's Issues

Error while importing quantitative maps expressed in oxide wt%

The problem is that the indices of the elements are not updated.

Temporary fix: use the converter and convert from Oxide Wt% to Element wt% and then from the newly generated Element wt% back to Oxide Wt%.

What should be done:

  • Check and correct the input function
  • Option 1: Add an indice check in the function for opening a project
  • Option 2: Add a check function in the menu for dealing with such complex (and unanticipated) cases

Option 2 sounds better as the element/oxide lists are not going to change in the future.

LAICPMS calibration

dwell times for elements are not automatically read from xml-file (AcqMethod.xml)

Error classification function

The classification in XMapTools 4 beta 2 does not check the selected maps. An error occurs if maps have been eliminated after adding them to the input list.

Major compatibility issue on macOS (XMapTools 4 beta 2 and 3 dev)

Several users are currently experiencing some major compatibility issues with the standalone applications of XMapTools 4 beta 2, and 3 dev on Mac probably due to additional security measures implemented in macOS.ย 

The error occurs after starting the classification, independently of the algorithm selected. The following message is displayed by macOS:

Screenshot 2022-06-03 at 15 41 18

One of the key MATLAB library is no longer running. This problem has been reported to MATLAB and we are waiting for a workaround. Several other Mac users have reported the same issue with other programs (e.g. https://ch.mathworks.com/matlabcentral/answers/1735020-library-not-loaded-rpath-libcudart-10-2-dylib) and we hope to get a solution soon.

At the moment, it is not recommended to use XMapTools standalone on macOS as classification is not possible. Many other functionalities such as the sampling tools are affected by this problem.

Updates will be posted below.

LAICPMS data handeling

Calibration of phase with internal standard:

  • saving the LOD for each calibrated phase into one subfolder. At the moment it is queuing all into the "others" folder. Maybe a LOD folder can come in handy
  • auto contrasting in the calibration module can be useful for selecting areas for the variable value calibration

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